miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 229678 0.66 0.970928
Target:  5'- cGUCgg-GGC-GCGCGUCCGCUcggcgAUCUa -3'
miRNA:   3'- -CAGuaaCUGuCGCGCAGGCGG-----UAGGg -5'
16229 5' -55.1 NC_004065.1 + 222956 0.66 0.970928
Target:  5'- uUCg--GGCAGCGCGaaCGaCCAgcUCCCg -3'
miRNA:   3'- cAGuaaCUGUCGCGCagGC-GGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 222854 1.11 0.004038
Target:  5'- cGUCAUUGACAGCGCGUCCGCCAUCCCc -3'
miRNA:   3'- -CAGUAACUGUCGCGCAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 220512 0.69 0.878764
Target:  5'- -aCGU--ACAGUGCGUgCGgCGUCCCg -3'
miRNA:   3'- caGUAacUGUCGCGCAgGCgGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 212134 0.67 0.95047
Target:  5'- aGUCucucGACGG-GCGUCCGUCcgCCg -3'
miRNA:   3'- -CAGuaa-CUGUCgCGCAGGCGGuaGGg -5'
16229 5' -55.1 NC_004065.1 + 210518 0.77 0.480582
Target:  5'- -cCGUUcGGCAGCGguUCCGCCGUCCCc -3'
miRNA:   3'- caGUAA-CUGUCGCgcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 209088 0.69 0.878763
Target:  5'- gGUCGagGAcCAGUGCGcCCGCC-UCCa -3'
miRNA:   3'- -CAGUaaCU-GUCGCGCaGGCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 205343 0.66 0.964938
Target:  5'- uUCAUcGGCAGCGuCGUC-GCC-UCCg -3'
miRNA:   3'- cAGUAaCUGUCGC-GCAGgCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 199932 0.73 0.714915
Target:  5'- cGUCccUGACAcaucagcGCGCGcUCCGCCAcggcggUCCCg -3'
miRNA:   3'- -CAGuaACUGU-------CGCGC-AGGCGGU------AGGG- -5'
16229 5' -55.1 NC_004065.1 + 199313 0.69 0.892255
Target:  5'- cGUCGUU--CAaCGCGUCCGCCAcCUCg -3'
miRNA:   3'- -CAGUAAcuGUcGCGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 199247 0.71 0.825208
Target:  5'- cGUCAUcGuCGGCguccGCGUCCGCCGaCCUc -3'
miRNA:   3'- -CAGUAaCuGUCG----CGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 196204 0.7 0.871701
Target:  5'- cGUgGUUGAuggcCAGCuuGUCCGCguCGUCCCa -3'
miRNA:   3'- -CAgUAACU----GUCGcgCAGGCG--GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 196063 0.66 0.970928
Target:  5'- cGUCGgggcccgUGAUGuccaucGCGUGUCCGUCGaaUCCCc -3'
miRNA:   3'- -CAGUa------ACUGU------CGCGCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 194267 0.67 0.94631
Target:  5'- -aCGUUcGACAGgGCca-CGCCGUCCUg -3'
miRNA:   3'- caGUAA-CUGUCgCGcagGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 186681 0.68 0.9166
Target:  5'- uGUCGggGACgcGGCGCGUggggcguccCCGCCGggCCa -3'
miRNA:   3'- -CAGUaaCUG--UCGCGCA---------GGCGGUagGG- -5'
16229 5' -55.1 NC_004065.1 + 185484 0.7 0.864432
Target:  5'- gGUCGggaGGCAGCGcCG-CCaCCGUCCCc -3'
miRNA:   3'- -CAGUaa-CUGUCGC-GCaGGcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 181356 0.68 0.937317
Target:  5'- uUCcagGACGGCcuGCGUCgGCUcgAUCCCa -3'
miRNA:   3'- cAGuaaCUGUCG--CGCAGgCGG--UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 175502 0.7 0.841449
Target:  5'- cGUCAguaGACAGaaCGCGUCCGCCGa--- -3'
miRNA:   3'- -CAGUaa-CUGUC--GCGCAGGCGGUaggg -5'
16229 5' -55.1 NC_004065.1 + 172971 0.66 0.968032
Target:  5'- -aCGUUGACGGgGCcuuGcCCGUCGUgCCg -3'
miRNA:   3'- caGUAACUGUCgCG---CaGGCGGUAgGG- -5'
16229 5' -55.1 NC_004065.1 + 171958 0.69 0.904875
Target:  5'- uGUCAUUG-CAGCGCa--CGCaCGUCCa -3'
miRNA:   3'- -CAGUAACuGUCGCGcagGCG-GUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.