miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 169185 0.69 0.898676
Target:  5'- cUCGaUGugAGUGUucgCCGCCGUCCUc -3'
miRNA:   3'- cAGUaACugUCGCGca-GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 169108 0.66 0.973631
Target:  5'- -aCGUccUGACAGaCGCGggccgCgGCCAgcaguUCCCg -3'
miRNA:   3'- caGUA--ACUGUC-GCGCa----GgCGGU-----AGGG- -5'
16229 5' -55.1 NC_004065.1 + 168448 0.66 0.961639
Target:  5'- cGUCGa-GACGGCGUccaagaGgaaCGCCGUCCCc -3'
miRNA:   3'- -CAGUaaCUGUCGCG------Cag-GCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 164940 0.69 0.904875
Target:  5'- aGUCGUUGAacGCGUGUaucugUCGCgAUCCCc -3'
miRNA:   3'- -CAGUAACUguCGCGCA-----GGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 164386 0.73 0.715888
Target:  5'- -gCAgcGGCAGCGgGUCCGUCAggUCCUc -3'
miRNA:   3'- caGUaaCUGUCGCgCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 163384 0.77 0.486151
Target:  5'- aUCAgcGuCAGCGCGUCCGCCAcgcagcgccgcagCCCg -3'
miRNA:   3'- cAGUaaCuGUCGCGCAGGCGGUa------------GGG- -5'
16229 5' -55.1 NC_004065.1 + 161326 0.68 0.927415
Target:  5'- uUCGUcGACAGCaGC-UCCGUCAUCUUc -3'
miRNA:   3'- cAGUAaCUGUCG-CGcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 160905 0.7 0.8717
Target:  5'- ---cUUGuCGGCGCG-CCGCgCGUCCUg -3'
miRNA:   3'- caguAACuGUCGCGCaGGCG-GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 160204 0.69 0.878763
Target:  5'- cUCGU--ACAGuCGCuucauGUCCGCCGUCCUc -3'
miRNA:   3'- cAGUAacUGUC-GCG-----CAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 154613 0.66 0.970928
Target:  5'- gGUCAUccGugAGCucuucggggGCGUCUGCCAgcaCCg -3'
miRNA:   3'- -CAGUAa-CugUCG---------CGCAGGCGGUag-GG- -5'
16229 5' -55.1 NC_004065.1 + 153497 0.67 0.95047
Target:  5'- -----cGACAgGUGCGaacacgCCGCCGUCCUc -3'
miRNA:   3'- caguaaCUGU-CGCGCa-----GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 153223 0.66 0.975411
Target:  5'- -----cGACGGCgaugaacggugauaGCGUUCGCCGUCgCg -3'
miRNA:   3'- caguaaCUGUCG--------------CGCAGGCGGUAGgG- -5'
16229 5' -55.1 NC_004065.1 + 151590 0.69 0.885617
Target:  5'- cGUCAUcGACgAGUGCGg-CGUCAUCCUc -3'
miRNA:   3'- -CAGUAaCUG-UCGCGCagGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 150638 0.77 0.489881
Target:  5'- aUCGUgUGuuuCAGCGCGUCCGCCcagAUCUCg -3'
miRNA:   3'- cAGUA-ACu--GUCGCGCAGGCGG---UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 142065 0.68 0.932481
Target:  5'- -aUAUcGACAGCGCGUUCGgCggGUCCg -3'
miRNA:   3'- caGUAaCUGUCGCGCAGGCgG--UAGGg -5'
16229 5' -55.1 NC_004065.1 + 140688 0.7 0.833415
Target:  5'- uGUCGUgccucgaguucUGGCAGCGCGUCCucagaacucgcuGCCGcgCUCg -3'
miRNA:   3'- -CAGUA-----------ACUGUCGCGCAGG------------CGGUa-GGG- -5'
16229 5' -55.1 NC_004065.1 + 139879 0.66 0.964938
Target:  5'- gGUCcgUGACGGUG-GUCCGggugagggugauCgCAUCCCc -3'
miRNA:   3'- -CAGuaACUGUCGCgCAGGC------------G-GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 139240 0.74 0.646614
Target:  5'- cGUCcugccggGACAGCGCGU-CGCC-UCCCu -3'
miRNA:   3'- -CAGuaa----CUGUCGCGCAgGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 138845 0.66 0.970928
Target:  5'- -----cGACGGCGCuUCCgcgGCCGUCgCCu -3'
miRNA:   3'- caguaaCUGUCGCGcAGG---CGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 137972 0.68 0.927415
Target:  5'- cUCGUUG-CA-CGCGUUCGUCAggCCCa -3'
miRNA:   3'- cAGUAACuGUcGCGCAGGCGGUa-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.