miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 137486 0.66 0.970928
Target:  5'- -gCGU--GC-GCGCGcCCGCCcgCCCg -3'
miRNA:   3'- caGUAacUGuCGCGCaGGCGGuaGGG- -5'
16229 5' -55.1 NC_004065.1 + 133730 0.68 0.910263
Target:  5'- aGUCGUgugGACGGCGUccgugacgccccuGgccgccCCGCCGUCCa -3'
miRNA:   3'- -CAGUAa--CUGUCGCG-------------Ca-----GGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 133247 0.7 0.841449
Target:  5'- aGUCGUcgaaGACGGcCGCGaugccgccUCCGCCGUCgCCc -3'
miRNA:   3'- -CAGUAa---CUGUC-GCGC--------AGGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 131763 0.7 0.841449
Target:  5'- -----aGGC-GCGCGcccagggCCGCCGUCCCg -3'
miRNA:   3'- caguaaCUGuCGCGCa------GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 128427 0.68 0.922122
Target:  5'- uUCAUaugcGAC-GCGCG-CCGCCucUCCCu -3'
miRNA:   3'- cAGUAa---CUGuCGCGCaGGCGGu-AGGG- -5'
16229 5' -55.1 NC_004065.1 + 126884 0.69 0.885617
Target:  5'- gGUCGUggaacaUGAUcGCGUGagCCGCCGUCgCCa -3'
miRNA:   3'- -CAGUA------ACUGuCGCGCa-GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 124257 0.69 0.898676
Target:  5'- -----cGACAGCGgGaagCCGCCGUCgCa -3'
miRNA:   3'- caguaaCUGUCGCgCa--GGCGGUAGgG- -5'
16229 5' -55.1 NC_004065.1 + 120879 0.67 0.954409
Target:  5'- cGUUGUcGACGGaacCGcCGUcacCCGCCGUCCCc -3'
miRNA:   3'- -CAGUAaCUGUC---GC-GCA---GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 119388 0.68 0.9166
Target:  5'- aUCGUUGGCccAGCGCaccuuGUggaCCGUCAUCCUg -3'
miRNA:   3'- cAGUAACUG--UCGCG-----CA---GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 119276 0.71 0.799606
Target:  5'- uGUCA--GGCGGCGCcagaaggggacGUCCGCCAaUCCa -3'
miRNA:   3'- -CAGUaaCUGUCGCG-----------CAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 116107 0.75 0.6166
Target:  5'- cGUCGUcGACAcGCGCGaucUCCGCCcUCUCg -3'
miRNA:   3'- -CAGUAaCUGU-CGCGC---AGGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 112991 0.67 0.94631
Target:  5'- cUUcgUGACGGCGU--UCGCgAUCCCc -3'
miRNA:   3'- cAGuaACUGUCGCGcaGGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 109899 0.67 0.940567
Target:  5'- cGUCGggGGguccCGGCuCGUCCGCCgcggccgccgucgcGUCCCg -3'
miRNA:   3'- -CAGUaaCU----GUCGcGCAGGCGG--------------UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 107109 0.68 0.922122
Target:  5'- uGUCGcggcUGAuCGGCGCGgugaUCC-CCAUCCCc -3'
miRNA:   3'- -CAGUa---ACU-GUCGCGC----AGGcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 101608 0.67 0.941926
Target:  5'- cUCggUGGCGGCGcCG-CCGCCGcUgCCg -3'
miRNA:   3'- cAGuaACUGUCGC-GCaGGCGGU-AgGG- -5'
16229 5' -55.1 NC_004065.1 + 99366 0.76 0.537535
Target:  5'- -gCGUUGGCAGCGaCGgcgCCGaCUGUCCCg -3'
miRNA:   3'- caGUAACUGUCGC-GCa--GGC-GGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 94636 0.71 0.808295
Target:  5'- gGUCGggcgcgGcCGGCGCGUCa-CCGUCCCu -3'
miRNA:   3'- -CAGUaa----CuGUCGCGCAGgcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 91417 0.68 0.910851
Target:  5'- cGUCGUaaGACAGCGUGUucaccgauuUCGCUacauAUCCCg -3'
miRNA:   3'- -CAGUAa-CUGUCGCGCA---------GGCGG----UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 90323 0.7 0.833415
Target:  5'- cUCAUcucGGCaAGCGCGUCCGCgaacuCGUCCg -3'
miRNA:   3'- cAGUAa--CUG-UCGCGCAGGCG-----GUAGGg -5'
16229 5' -55.1 NC_004065.1 + 87527 0.69 0.88153
Target:  5'- uGUCGacgcGCAGCGCGUgccagacgggguuagCCGCCuGUCCCc -3'
miRNA:   3'- -CAGUaac-UGUCGCGCA---------------GGCGG-UAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.