Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 84044 | 0.66 | 0.968032 |
Target: 5'- -----aGACGGCGU--CCGCCAUCUg -3' miRNA: 3'- caguaaCUGUCGCGcaGGCGGUAGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 76675 | 0.67 | 0.954409 |
Target: 5'- -----gGAUcGCGuCGgcgCCGCCGUCCCc -3' miRNA: 3'- caguaaCUGuCGC-GCa--GGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 74658 | 0.72 | 0.735192 |
Target: 5'- gGUCcg-GACcgcGGCGCGUCCGCCGUagcgcagggUCCg -3' miRNA: 3'- -CAGuaaCUG---UCGCGCAGGCGGUA---------GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 72301 | 0.74 | 0.666581 |
Target: 5'- -aCGUUGACAucGcCGCGaCCGCgGUCCCg -3' miRNA: 3'- caGUAACUGU--C-GCGCaGGCGgUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 64643 | 0.77 | 0.480583 |
Target: 5'- -cCAUcGACcGCGCGUCCGCCGUgCUg -3' miRNA: 3'- caGUAaCUGuCGCGCAGGCGGUAgGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 64009 | 0.69 | 0.885617 |
Target: 5'- -aCggUGACGGCcucccGCGUCCGUCGuuUCCUg -3' miRNA: 3'- caGuaACUGUCG-----CGCAGGCGGU--AGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 57907 | 0.67 | 0.94631 |
Target: 5'- uGUCGUUGAagUAGCcaccGCGgucagagCCGCC-UCCCc -3' miRNA: 3'- -CAGUAACU--GUCG----CGCa------GGCGGuAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 52046 | 0.68 | 0.924267 |
Target: 5'- cUCGUUGGCAGUcuccucggcgaagcgGCGUUCGCgAgaacCCCa -3' miRNA: 3'- cAGUAACUGUCG---------------CGCAGGCGgUa---GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 50334 | 0.67 | 0.95047 |
Target: 5'- ----gUGGCAcGCGUGgccaccgCCGCgAUCCCg -3' miRNA: 3'- caguaACUGU-CGCGCa------GGCGgUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 46001 | 0.66 | 0.970928 |
Target: 5'- -gCcgUGGCGGCGUugaacucggGUCUGCCGauggCCCc -3' miRNA: 3'- caGuaACUGUCGCG---------CAGGCGGUa---GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 44536 | 0.66 | 0.976146 |
Target: 5'- -cCGggGACGGUgGCGgcgCUGCC-UCCCg -3' miRNA: 3'- caGUaaCUGUCG-CGCa--GGCGGuAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 41850 | 0.69 | 0.885617 |
Target: 5'- --uGUUGACGGUGaCGaugCUGCCGUUCCu -3' miRNA: 3'- cagUAACUGUCGC-GCa--GGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 39980 | 0.67 | 0.95047 |
Target: 5'- -cCGUUGACGGUGUcuguacaccgCCGCCAacgcuauuacuUCCCg -3' miRNA: 3'- caGUAACUGUCGCGca--------GGCGGU-----------AGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 37210 | 0.66 | 0.961639 |
Target: 5'- cUCAagcGCAGCGCccagacgCCGCCGUCuCCa -3' miRNA: 3'- cAGUaacUGUCGCGca-----GGCGGUAG-GG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 37159 | 0.67 | 0.941926 |
Target: 5'- aUCGgcGGCAGCaGUGUcagcaacuccgCCGCCGUCaCCg -3' miRNA: 3'- cAGUaaCUGUCG-CGCA-----------GGCGGUAG-GG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 35561 | 0.68 | 0.93248 |
Target: 5'- -gCGUgaGCGGCgGCG-CCGCCGUgCCCa -3' miRNA: 3'- caGUAacUGUCG-CGCaGGCGGUA-GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 35012 | 0.8 | 0.345499 |
Target: 5'- cGUCGUUGGCGGCGCGUCgaaCAUCUCa -3' miRNA: 3'- -CAGUAACUGUCGCGCAGgcgGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 35001 | 0.73 | 0.725578 |
Target: 5'- gGUCAUgGACgAGCGCGgCCGCUucuUCCUg -3' miRNA: 3'- -CAGUAaCUG-UCGCGCaGGCGGu--AGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 34106 | 0.7 | 0.856963 |
Target: 5'- aUCGgcGAUaaAGCGCcggcagaacgaGUCCGCCGUCUCg -3' miRNA: 3'- cAGUaaCUG--UCGCG-----------CAGGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 32260 | 0.66 | 0.973631 |
Target: 5'- aUCAUcgGACGGCuccgaGUGcCCGCUGUCCg -3' miRNA: 3'- cAGUAa-CUGUCG-----CGCaGGCGGUAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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