Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 31058 | 0.67 | 0.95047 |
Target: 5'- aGUCuGUUGACGGCGUa--CGCCuUCCUc -3' miRNA: 3'- -CAG-UAACUGUCGCGcagGCGGuAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 29847 | 0.7 | 0.856963 |
Target: 5'- -----aGGuCAGCgGCaUCCGCCAUCCCu -3' miRNA: 3'- caguaaCU-GUCG-CGcAGGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 22913 | 0.72 | 0.772702 |
Target: 5'- gGUCAgUGGCGGCG-GUCgGCgGUUCCg -3' miRNA: 3'- -CAGUaACUGUCGCgCAGgCGgUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 15907 | 0.66 | 0.970928 |
Target: 5'- uUUAUUGuCGGCGCGUgCGaCCggCCg -3' miRNA: 3'- cAGUAACuGUCGCGCAgGC-GGuaGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 15826 | 0.7 | 0.8493 |
Target: 5'- uGUCAcaGAUAGCGCGUCUGUUG-CCUa -3' miRNA: 3'- -CAGUaaCUGUCGCGCAGGCGGUaGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 6920 | 0.66 | 0.970928 |
Target: 5'- uUCAgcugcggGcACGGCcucgGCGUCCGCCGUCg- -3' miRNA: 3'- cAGUaa-----C-UGUCG----CGCAGGCGGUAGgg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 2550 | 0.66 | 0.961639 |
Target: 5'- aUCGgucGACGGC-CGUCCGUCuUCCg -3' miRNA: 3'- cAGUaa-CUGUCGcGCAGGCGGuAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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