miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 199313 0.69 0.892255
Target:  5'- cGUCGUU--CAaCGCGUCCGCCAcCUCg -3'
miRNA:   3'- -CAGUAAcuGUcGCGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 29847 0.7 0.856963
Target:  5'- -----aGGuCAGCgGCaUCCGCCAUCCCu -3'
miRNA:   3'- caguaaCU-GUCG-CGcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 34106 0.7 0.856963
Target:  5'- aUCGgcGAUaaAGCGCcggcagaacgaGUCCGCCGUCUCg -3'
miRNA:   3'- cAGUaaCUG--UCGCG-----------CAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 196204 0.7 0.871701
Target:  5'- cGUgGUUGAuggcCAGCuuGUCCGCguCGUCCCa -3'
miRNA:   3'- -CAgUAACU----GUCGcgCAGGCG--GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 220512 0.69 0.878764
Target:  5'- -aCGU--ACAGUGCGUgCGgCGUCCCg -3'
miRNA:   3'- caGUAacUGUCGCGCAgGCgGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 41850 0.69 0.885617
Target:  5'- --uGUUGACGGUGaCGaugCUGCCGUUCCu -3'
miRNA:   3'- cagUAACUGUCGC-GCa--GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 64009 0.69 0.885617
Target:  5'- -aCggUGACGGCcucccGCGUCCGUCGuuUCCUg -3'
miRNA:   3'- caGuaACUGUCG-----CGCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 126884 0.69 0.885617
Target:  5'- gGUCGUggaacaUGAUcGCGUGagCCGCCGUCgCCa -3'
miRNA:   3'- -CAGUA------ACUGuCGCGCa-GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 151590 0.69 0.885617
Target:  5'- cGUCAUcGACgAGUGCGg-CGUCAUCCUc -3'
miRNA:   3'- -CAGUAaCUG-UCGCGCagGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 15826 0.7 0.8493
Target:  5'- uGUCAcaGAUAGCGCGUCUGUUG-CCUa -3'
miRNA:   3'- -CAGUaaCUGUCGCGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 175502 0.7 0.841449
Target:  5'- cGUCAguaGACAGaaCGCGUCCGCCGa--- -3'
miRNA:   3'- -CAGUaa-CUGUC--GCGCAGGCGGUaggg -5'
16229 5' -55.1 NC_004065.1 + 199247 0.71 0.825208
Target:  5'- cGUCAUcGuCGGCguccGCGUCCGCCGaCCUc -3'
miRNA:   3'- -CAGUAaCuGUCG----CGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 35012 0.8 0.345499
Target:  5'- cGUCGUUGGCGGCGCGUCgaaCAUCUCa -3'
miRNA:   3'- -CAGUAACUGUCGCGCAGgcgGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 64643 0.77 0.480583
Target:  5'- -cCAUcGACcGCGCGUCCGCCGUgCUg -3'
miRNA:   3'- caGUAaCUGuCGCGCAGGCGGUAgGG- -5'
16229 5' -55.1 NC_004065.1 + 150638 0.77 0.489881
Target:  5'- aUCGUgUGuuuCAGCGCGUCCGCCcagAUCUCg -3'
miRNA:   3'- cAGUA-ACu--GUCGCGCAGGCGG---UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 99366 0.76 0.537535
Target:  5'- -gCGUUGGCAGCGaCGgcgCCGaCUGUCCCg -3'
miRNA:   3'- caGUAACUGUCGC-GCa--GGC-GGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 139240 0.74 0.646614
Target:  5'- cGUCcugccggGACAGCGCGU-CGCC-UCCCu -3'
miRNA:   3'- -CAGuaa----CUGUCGCGCAgGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 199932 0.73 0.714915
Target:  5'- cGUCccUGACAcaucagcGCGCGcUCCGCCAcggcggUCCCg -3'
miRNA:   3'- -CAGuaACUGU-------CGCGC-AGGCGGU------AGGG- -5'
16229 5' -55.1 NC_004065.1 + 74658 0.72 0.735192
Target:  5'- gGUCcg-GACcgcGGCGCGUCCGCCGUagcgcagggUCCg -3'
miRNA:   3'- -CAGuaaCUG---UCGCGCAGGCGGUA---------GGG- -5'
16229 5' -55.1 NC_004065.1 + 22913 0.72 0.772702
Target:  5'- gGUCAgUGGCGGCG-GUCgGCgGUUCCg -3'
miRNA:   3'- -CAGUaACUGUCGCgCAGgCGgUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.