miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 41850 0.69 0.885617
Target:  5'- --uGUUGACGGUGaCGaugCUGCCGUUCCu -3'
miRNA:   3'- cagUAACUGUCGC-GCa--GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 220512 0.69 0.878764
Target:  5'- -aCGU--ACAGUGCGUgCGgCGUCCCg -3'
miRNA:   3'- caGUAacUGUCGCGCAgGCgGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 196204 0.7 0.871701
Target:  5'- cGUgGUUGAuggcCAGCuuGUCCGCguCGUCCCa -3'
miRNA:   3'- -CAgUAACU----GUCGcgCAGGCG--GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 34106 0.7 0.856963
Target:  5'- aUCGgcGAUaaAGCGCcggcagaacgaGUCCGCCGUCUCg -3'
miRNA:   3'- cAGUaaCUG--UCGCG-----------CAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 29847 0.7 0.856963
Target:  5'- -----aGGuCAGCgGCaUCCGCCAUCCCu -3'
miRNA:   3'- caguaaCU-GUCG-CGcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 90323 0.7 0.833415
Target:  5'- cUCAUcucGGCaAGCGCGUCCGCgaacuCGUCCg -3'
miRNA:   3'- cAGUAa--CUG-UCGCGCAGGCG-----GUAGGg -5'
16229 5' -55.1 NC_004065.1 + 133247 0.7 0.841449
Target:  5'- aGUCGUcgaaGACGGcCGCGaugccgccUCCGCCGUCgCCc -3'
miRNA:   3'- -CAGUAa---CUGUC-GCGC--------AGGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 131763 0.7 0.841449
Target:  5'- -----aGGC-GCGCGcccagggCCGCCGUCCCg -3'
miRNA:   3'- caguaaCUGuCGCGCa------GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 185484 0.7 0.864432
Target:  5'- gGUCGggaGGCAGCGcCG-CCaCCGUCCCc -3'
miRNA:   3'- -CAGUaa-CUGUCGC-GCaGGcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 160905 0.7 0.8717
Target:  5'- ---cUUGuCGGCGCG-CCGCgCGUCCUg -3'
miRNA:   3'- caguAACuGUCGCGCaGGCG-GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 209088 0.69 0.878763
Target:  5'- gGUCGagGAcCAGUGCGcCCGCC-UCCa -3'
miRNA:   3'- -CAGUaaCU-GUCGCGCaGGCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 140688 0.7 0.833415
Target:  5'- uGUCGUgccucgaguucUGGCAGCGCGUCCucagaacucgcuGCCGcgCUCg -3'
miRNA:   3'- -CAGUA-----------ACUGUCGCGCAGG------------CGGUa-GGG- -5'
16229 5' -55.1 NC_004065.1 + 94636 0.71 0.808295
Target:  5'- gGUCGggcgcgGcCGGCGCGUCa-CCGUCCCu -3'
miRNA:   3'- -CAGUaa----CuGUCGCGCAGgcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 119276 0.71 0.799606
Target:  5'- uGUCA--GGCGGCGCcagaaggggacGUCCGCCAaUCCa -3'
miRNA:   3'- -CAGUaaCUGUCGCG-----------CAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 35001 0.73 0.725578
Target:  5'- gGUCAUgGACgAGCGCGgCCGCUucuUCCUg -3'
miRNA:   3'- -CAGUAaCUG-UCGCGCaGGCGGu--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 164386 0.73 0.715888
Target:  5'- -gCAgcGGCAGCGgGUCCGUCAggUCCUc -3'
miRNA:   3'- caGUaaCUGUCGCgCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 72301 0.74 0.666581
Target:  5'- -aCGUUGACAucGcCGCGaCCGCgGUCCCg -3'
miRNA:   3'- caGUAACUGU--C-GCGCaGGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 116107 0.75 0.6166
Target:  5'- cGUCGUcGACAcGCGCGaucUCCGCCcUCUCg -3'
miRNA:   3'- -CAGUAaCUGU-CGCGC---AGGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 163384 0.77 0.486151
Target:  5'- aUCAgcGuCAGCGCGUCCGCCAcgcagcgccgcagCCCg -3'
miRNA:   3'- cAGUaaCuGUCGCGCAGGCGGUa------------GGG- -5'
16229 5' -55.1 NC_004065.1 + 153223 0.66 0.975411
Target:  5'- -----cGACGGCgaugaacggugauaGCGUUCGCCGUCgCg -3'
miRNA:   3'- caguaaCUGUCG--------------CGCAGGCGGUAGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.