Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 84044 | 0.66 | 0.968032 |
Target: 5'- -----aGACGGCGU--CCGCCAUCUg -3' miRNA: 3'- caguaaCUGUCGCGcaGGCGGUAGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 172971 | 0.66 | 0.968032 |
Target: 5'- -aCGUUGACGGgGCcuuGcCCGUCGUgCCg -3' miRNA: 3'- caGUAACUGUCgCG---CaGGCGGUAgGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 133730 | 0.68 | 0.910263 |
Target: 5'- aGUCGUgugGACGGCGUccgugacgccccuGgccgccCCGCCGUCCa -3' miRNA: 3'- -CAGUAa--CUGUCGCG-------------Ca-----GGCGGUAGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 164940 | 0.69 | 0.904875 |
Target: 5'- aGUCGUUGAacGCGUGUaucugUCGCgAUCCCc -3' miRNA: 3'- -CAGUAACUguCGCGCA-----GGCGgUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 163384 | 0.77 | 0.486151 |
Target: 5'- aUCAgcGuCAGCGCGUCCGCCAcgcagcgccgcagCCCg -3' miRNA: 3'- cAGUaaCuGUCGCGCAGGCGGUa------------GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 116107 | 0.75 | 0.6166 |
Target: 5'- cGUCGUcGACAcGCGCGaucUCCGCCcUCUCg -3' miRNA: 3'- -CAGUAaCUGU-CGCGC---AGGCGGuAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 72301 | 0.74 | 0.666581 |
Target: 5'- -aCGUUGACAucGcCGCGaCCGCgGUCCCg -3' miRNA: 3'- caGUAACUGU--C-GCGCaGGCGgUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 164386 | 0.73 | 0.715888 |
Target: 5'- -gCAgcGGCAGCGgGUCCGUCAggUCCUc -3' miRNA: 3'- caGUaaCUGUCGCgCAGGCGGU--AGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 35001 | 0.73 | 0.725578 |
Target: 5'- gGUCAUgGACgAGCGCGgCCGCUucuUCCUg -3' miRNA: 3'- -CAGUAaCUG-UCGCGCaGGCGGu--AGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 119276 | 0.71 | 0.799606 |
Target: 5'- uGUCA--GGCGGCGCcagaaggggacGUCCGCCAaUCCa -3' miRNA: 3'- -CAGUaaCUGUCGCG-----------CAGGCGGUaGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 94636 | 0.71 | 0.808295 |
Target: 5'- gGUCGggcgcgGcCGGCGCGUCa-CCGUCCCu -3' miRNA: 3'- -CAGUaa----CuGUCGCGCAGgcGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 140688 | 0.7 | 0.833415 |
Target: 5'- uGUCGUgccucgaguucUGGCAGCGCGUCCucagaacucgcuGCCGcgCUCg -3' miRNA: 3'- -CAGUA-----------ACUGUCGCGCAGG------------CGGUa-GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 90323 | 0.7 | 0.833415 |
Target: 5'- cUCAUcucGGCaAGCGCGUCCGCgaacuCGUCCg -3' miRNA: 3'- cAGUAa--CUG-UCGCGCAGGCG-----GUAGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 133247 | 0.7 | 0.841449 |
Target: 5'- aGUCGUcgaaGACGGcCGCGaugccgccUCCGCCGUCgCCc -3' miRNA: 3'- -CAGUAa---CUGUC-GCGC--------AGGCGGUAG-GG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 131763 | 0.7 | 0.841449 |
Target: 5'- -----aGGC-GCGCGcccagggCCGCCGUCCCg -3' miRNA: 3'- caguaaCUGuCGCGCa------GGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 185484 | 0.7 | 0.864432 |
Target: 5'- gGUCGggaGGCAGCGcCG-CCaCCGUCCCc -3' miRNA: 3'- -CAGUaa-CUGUCGC-GCaGGcGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 160905 | 0.7 | 0.8717 |
Target: 5'- ---cUUGuCGGCGCG-CCGCgCGUCCUg -3' miRNA: 3'- caguAACuGUCGCGCaGGCG-GUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 209088 | 0.69 | 0.878763 |
Target: 5'- gGUCGagGAcCAGUGCGcCCGCC-UCCa -3' miRNA: 3'- -CAGUaaCU-GUCGCGCaGGCGGuAGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 160204 | 0.69 | 0.878763 |
Target: 5'- cUCGU--ACAGuCGCuucauGUCCGCCGUCCUc -3' miRNA: 3'- cAGUAacUGUC-GCG-----CAGGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 87527 | 0.69 | 0.88153 |
Target: 5'- uGUCGacgcGCAGCGCGUgccagacgggguuagCCGCCuGUCCCc -3' miRNA: 3'- -CAGUaac-UGUCGCGCA---------------GGCGG-UAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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