miRNA display CGI

Results 81 - 87 of 87 are showing below:
Show page: 1 2 3 4 5

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16229	5'	-55.1	NC_004065.1	+	164940	0.69	0.904875
	Target:  5'- aGUCGUUGAacGCGUGUaucugUCGCgAUCCCc -3' miRNA:   3'- -CAGUAACUguCGCGCA-----GGCGgUAGGG- -5'
16229	5'	-55.1	NC_004065.1	+	87527	0.69	0.88153
	Target:  5'- uGUCGacgcGCAGCGCGUgccagacgggguuagCCGCCuGUCCCc -3' miRNA:   3'- -CAGUaac-UGUCGCGCA---------------GGCGG-UAGGG- -5'
16229	5'	-55.1	NC_004065.1	+	160204	0.69	0.878763
	Target:  5'- cUCGU--ACAGuCGCuucauGUCCGCCGUCCUc -3' miRNA:   3'- cAGUAacUGUC-GCG-----CAGGCGGUAGGG- -5'
16229	5'	-55.1	NC_004065.1	+	209088	0.69	0.878763
	Target:  5'- gGUCGagGAcCAGUGCGcCCGCC-UCCa -3' miRNA:   3'- -CAGUaaCU-GUCGCGCaGGCGGuAGGg -5'
16229	5'	-55.1	NC_004065.1	+	160905	0.7	0.8717
	Target:  5'- ---cUUGuCGGCGCG-CCGCgCGUCCUg -3' miRNA:   3'- caguAACuGUCGCGCaGGCG-GUAGGG- -5'
16229	5'	-55.1	NC_004065.1	+	185484	0.7	0.864432
	Target:  5'- gGUCGggaGGCAGCGcCG-CCaCCGUCCCc -3' miRNA:   3'- -CAGUaa-CUGUCGC-GCaGGcGGUAGGG- -5'
16229	5'	-55.1	NC_004065.1	+	210518	0.77	0.480582
	Target:  5'- -cCGUUcGGCAGCGguUCCGCCGUCCCc -3' miRNA:   3'- caGUAA-CUGUCGCgcAGGCGGUAGGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home