miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 128427 0.68 0.922122
Target:  5'- uUCAUaugcGAC-GCGCG-CCGCCucUCCCu -3'
miRNA:   3'- cAGUAa---CUGuCGCGCaGGCGGu-AGGG- -5'
16229 5' -55.1 NC_004065.1 + 91417 0.68 0.910851
Target:  5'- cGUCGUaaGACAGCGUGUucaccgauuUCGCUacauAUCCCg -3'
miRNA:   3'- -CAGUAa-CUGUCGCGCA---------GGCGG----UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 133247 0.7 0.841449
Target:  5'- aGUCGUcgaaGACGGcCGCGaugccgccUCCGCCGUCgCCc -3'
miRNA:   3'- -CAGUAa---CUGUC-GCGC--------AGGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 72301 0.74 0.666581
Target:  5'- -aCGUUGACAucGcCGCGaCCGCgGUCCCg -3'
miRNA:   3'- caGUAACUGU--C-GCGCaGGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 84044 0.66 0.968032
Target:  5'- -----aGACGGCGU--CCGCCAUCUg -3'
miRNA:   3'- caguaaCUGUCGCGcaGGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 112991 0.67 0.94631
Target:  5'- cUUcgUGACGGCGU--UCGCgAUCCCc -3'
miRNA:   3'- cAGuaACUGUCGCGcaGGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 164940 0.69 0.904875
Target:  5'- aGUCGUUGAacGCGUGUaucugUCGCgAUCCCc -3'
miRNA:   3'- -CAGUAACUguCGCGCA-----GGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 116107 0.75 0.6166
Target:  5'- cGUCGUcGACAcGCGCGaucUCCGCCcUCUCg -3'
miRNA:   3'- -CAGUAaCUGU-CGCGC---AGGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 101608 0.67 0.941926
Target:  5'- cUCggUGGCGGCGcCG-CCGCCGcUgCCg -3'
miRNA:   3'- cAGuaACUGUCGC-GCaGGCGGU-AgGG- -5'
16229 5' -55.1 NC_004065.1 + 163384 0.77 0.486151
Target:  5'- aUCAgcGuCAGCGCGUCCGCCAcgcagcgccgcagCCCg -3'
miRNA:   3'- cAGUaaCuGUCGCGCAGGCGGUa------------GGG- -5'
16229 5' -55.1 NC_004065.1 + 133730 0.68 0.910263
Target:  5'- aGUCGUgugGACGGCGUccgugacgccccuGgccgccCCGCCGUCCa -3'
miRNA:   3'- -CAGUAa--CUGUCGCG-------------Ca-----GGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 161326 0.68 0.927415
Target:  5'- uUCGUcGACAGCaGC-UCCGUCAUCUUc -3'
miRNA:   3'- cAGUAaCUGUCG-CGcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 209088 0.69 0.878763
Target:  5'- gGUCGagGAcCAGUGCGcCCGCC-UCCa -3'
miRNA:   3'- -CAGUaaCU-GUCGCGCaGGCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 131763 0.7 0.841449
Target:  5'- -----aGGC-GCGCGcccagggCCGCCGUCCCg -3'
miRNA:   3'- caguaaCUGuCGCGCa------GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 94636 0.71 0.808295
Target:  5'- gGUCGggcgcgGcCGGCGCGUCa-CCGUCCCu -3'
miRNA:   3'- -CAGUaa----CuGUCGCGCAGgcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 164386 0.73 0.715888
Target:  5'- -gCAgcGGCAGCGgGUCCGUCAggUCCUc -3'
miRNA:   3'- caGUaaCUGUCGCgCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 137486 0.66 0.970928
Target:  5'- -gCGU--GC-GCGCGcCCGCCcgCCCg -3'
miRNA:   3'- caGUAacUGuCGCGCaGGCGGuaGGG- -5'
16229 5' -55.1 NC_004065.1 + 172971 0.66 0.968032
Target:  5'- -aCGUUGACGGgGCcuuGcCCGUCGUgCCg -3'
miRNA:   3'- caGUAACUGUCgCG---CaGGCGGUAgGG- -5'
16229 5' -55.1 NC_004065.1 + 168448 0.66 0.961639
Target:  5'- cGUCGa-GACGGCGUccaagaGgaaCGCCGUCCCc -3'
miRNA:   3'- -CAGUaaCUGUCGCG------Cag-GCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 212134 0.67 0.95047
Target:  5'- aGUCucucGACGG-GCGUCCGUCcgCCg -3'
miRNA:   3'- -CAGuaa-CUGUCgCGCAGGCGGuaGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.