miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 205343 0.66 0.964938
Target:  5'- uUCAUcGGCAGCGuCGUC-GCC-UCCg -3'
miRNA:   3'- cAGUAaCUGUCGC-GCAGgCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 168448 0.66 0.961639
Target:  5'- cGUCGa-GACGGCGUccaagaGgaaCGCCGUCCCc -3'
miRNA:   3'- -CAGUaaCUGUCGCG------Cag-GCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 139240 0.74 0.646614
Target:  5'- cGUCcugccggGACAGCGCGU-CGCC-UCCCu -3'
miRNA:   3'- -CAGuaa----CUGUCGCGCAgGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 199932 0.73 0.714915
Target:  5'- cGUCccUGACAcaucagcGCGCGcUCCGCCAcggcggUCCCg -3'
miRNA:   3'- -CAGuaACUGU-------CGCGC-AGGCGGU------AGGG- -5'
16229 5' -55.1 NC_004065.1 + 64643 0.77 0.480583
Target:  5'- -cCAUcGACcGCGCGUCCGCCGUgCUg -3'
miRNA:   3'- caGUAaCUGuCGCGCAGGCGGUAgGG- -5'
16229 5' -55.1 NC_004065.1 + 194267 0.67 0.94631
Target:  5'- -aCGUUcGACAGgGCca-CGCCGUCCUg -3'
miRNA:   3'- caGUAA-CUGUCgCGcagGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 15826 0.7 0.8493
Target:  5'- uGUCAcaGAUAGCGCGUCUGUUG-CCUa -3'
miRNA:   3'- -CAGUaaCUGUCGCGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 29847 0.7 0.856963
Target:  5'- -----aGGuCAGCgGCaUCCGCCAUCCCu -3'
miRNA:   3'- caguaaCU-GUCG-CGcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 34106 0.7 0.856963
Target:  5'- aUCGgcGAUaaAGCGCcggcagaacgaGUCCGCCGUCUCg -3'
miRNA:   3'- cAGUaaCUG--UCGCG-----------CAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 109899 0.67 0.940567
Target:  5'- cGUCGggGGguccCGGCuCGUCCGCCgcggccgccgucgcGUCCCg -3'
miRNA:   3'- -CAGUaaCU----GUCGcGCAGGCGG--------------UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 37159 0.67 0.941926
Target:  5'- aUCGgcGGCAGCaGUGUcagcaacuccgCCGCCGUCaCCg -3'
miRNA:   3'- cAGUaaCUGUCG-CGCA-----------GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 137972 0.68 0.927415
Target:  5'- cUCGUUG-CA-CGCGUUCGUCAggCCCa -3'
miRNA:   3'- cAGUAACuGUcGCGCAGGCGGUa-GGG- -5'
16229 5' -55.1 NC_004065.1 + 52046 0.68 0.924267
Target:  5'- cUCGUUGGCAGUcuccucggcgaagcgGCGUUCGCgAgaacCCCa -3'
miRNA:   3'- cAGUAACUGUCG---------------CGCAGGCGgUa---GGG- -5'
16229 5' -55.1 NC_004065.1 + 119388 0.68 0.9166
Target:  5'- aUCGUUGGCccAGCGCaccuuGUggaCCGUCAUCCUg -3'
miRNA:   3'- cAGUAACUG--UCGCG-----CA---GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 169185 0.69 0.898676
Target:  5'- cUCGaUGugAGUGUucgCCGCCGUCCUc -3'
miRNA:   3'- cAGUaACugUCGCGca-GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 124257 0.69 0.898676
Target:  5'- -----cGACAGCGgGaagCCGCCGUCgCa -3'
miRNA:   3'- caguaaCUGUCGCgCa--GGCGGUAGgG- -5'
16229 5' -55.1 NC_004065.1 + 171958 0.69 0.904875
Target:  5'- uGUCAUUG-CAGCGCa--CGCaCGUCCa -3'
miRNA:   3'- -CAGUAACuGUCGCGcagGCG-GUAGGg -5'
16229 5' -55.1 NC_004065.1 + 32260 0.66 0.973631
Target:  5'- aUCAUcgGACGGCuccgaGUGcCCGCUGUCCg -3'
miRNA:   3'- cAGUAa-CUGUCG-----CGCaGGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 44536 0.66 0.976146
Target:  5'- -cCGggGACGGUgGCGgcgCUGCC-UCCCg -3'
miRNA:   3'- caGUaaCUGUCG-CGCa--GGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 196204 0.7 0.871701
Target:  5'- cGUgGUUGAuggcCAGCuuGUCCGCguCGUCCCa -3'
miRNA:   3'- -CAgUAACU----GUCGcgCAGGCG--GUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.