miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 139240 0.74 0.646614
Target:  5'- cGUCcugccggGACAGCGCGU-CGCC-UCCCu -3'
miRNA:   3'- -CAGuaa----CUGUCGCGCAgGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 99366 0.76 0.537535
Target:  5'- -gCGUUGGCAGCGaCGgcgCCGaCUGUCCCg -3'
miRNA:   3'- caGUAACUGUCGC-GCa--GGC-GGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 171958 0.69 0.904875
Target:  5'- uGUCAUUG-CAGCGCa--CGCaCGUCCa -3'
miRNA:   3'- -CAGUAACuGUCGCGcagGCG-GUAGGg -5'
16229 5' -55.1 NC_004065.1 + 119388 0.68 0.9166
Target:  5'- aUCGUUGGCccAGCGCaccuuGUggaCCGUCAUCCUg -3'
miRNA:   3'- cAGUAACUG--UCGCG-----CA---GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 169108 0.66 0.973631
Target:  5'- -aCGUccUGACAGaCGCGggccgCgGCCAgcaguUCCCg -3'
miRNA:   3'- caGUA--ACUGUC-GCGCa----GgCGGU-----AGGG- -5'
16229 5' -55.1 NC_004065.1 + 229678 0.66 0.970928
Target:  5'- cGUCgg-GGC-GCGCGUCCGCUcggcgAUCUa -3'
miRNA:   3'- -CAGuaaCUGuCGCGCAGGCGG-----UAGGg -5'
16229 5' -55.1 NC_004065.1 + 196063 0.66 0.970928
Target:  5'- cGUCGgggcccgUGAUGuccaucGCGUGUCCGUCGaaUCCCc -3'
miRNA:   3'- -CAGUa------ACUGU------CGCGCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 222956 0.66 0.970928
Target:  5'- uUCg--GGCAGCGCGaaCGaCCAgcUCCCg -3'
miRNA:   3'- cAGuaaCUGUCGCGCagGC-GGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 46001 0.66 0.970928
Target:  5'- -gCcgUGGCGGCGUugaacucggGUCUGCCGauggCCCc -3'
miRNA:   3'- caGuaACUGUCGCG---------CAGGCGGUa---GGG- -5'
16229 5' -55.1 NC_004065.1 + 139879 0.66 0.964938
Target:  5'- gGUCcgUGACGGUG-GUCCGggugagggugauCgCAUCCCc -3'
miRNA:   3'- -CAGuaACUGUCGCgCAGGC------------G-GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 37210 0.66 0.961639
Target:  5'- cUCAagcGCAGCGCccagacgCCGCCGUCuCCa -3'
miRNA:   3'- cAGUaacUGUCGCGca-----GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 76675 0.67 0.954409
Target:  5'- -----gGAUcGCGuCGgcgCCGCCGUCCCc -3'
miRNA:   3'- caguaaCUGuCGC-GCa--GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 50334 0.67 0.95047
Target:  5'- ----gUGGCAcGCGUGgccaccgCCGCgAUCCCg -3'
miRNA:   3'- caguaACUGU-CGCGCa------GGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 39980 0.67 0.95047
Target:  5'- -cCGUUGACGGUGUcuguacaccgCCGCCAacgcuauuacuUCCCg -3'
miRNA:   3'- caGUAACUGUCGCGca--------GGCGGU-----------AGGG- -5'
16229 5' -55.1 NC_004065.1 + 31058 0.67 0.95047
Target:  5'- aGUCuGUUGACGGCGUa--CGCCuUCCUc -3'
miRNA:   3'- -CAG-UAACUGUCGCGcagGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 37159 0.67 0.941926
Target:  5'- aUCGgcGGCAGCaGUGUcagcaacuccgCCGCCGUCaCCg -3'
miRNA:   3'- cAGUaaCUGUCG-CGCA-----------GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 109899 0.67 0.940567
Target:  5'- cGUCGggGGguccCGGCuCGUCCGCCgcggccgccgucgcGUCCCg -3'
miRNA:   3'- -CAGUaaCU----GUCGcGCAGGCGG--------------UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 142065 0.68 0.932481
Target:  5'- -aUAUcGACAGCGCGUUCGgCggGUCCg -3'
miRNA:   3'- caGUAaCUGUCGCGCAGGCgG--UAGGg -5'
16229 5' -55.1 NC_004065.1 + 137972 0.68 0.927415
Target:  5'- cUCGUUG-CA-CGCGUUCGUCAggCCCa -3'
miRNA:   3'- cAGUAACuGUcGCGCAGGCGGUa-GGG- -5'
16229 5' -55.1 NC_004065.1 + 52046 0.68 0.924267
Target:  5'- cUCGUUGGCAGUcuccucggcgaagcgGCGUUCGCgAgaacCCCa -3'
miRNA:   3'- cAGUAACUGUCG---------------CGCAGGCGgUa---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.