Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 52046 | 0.68 | 0.924267 |
Target: 5'- cUCGUUGGCAGUcuccucggcgaagcgGCGUUCGCgAgaacCCCa -3' miRNA: 3'- cAGUAACUGUCG---------------CGCAGGCGgUa---GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 137972 | 0.68 | 0.927415 |
Target: 5'- cUCGUUG-CA-CGCGUUCGUCAggCCCa -3' miRNA: 3'- cAGUAACuGUcGCGCAGGCGGUa-GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 142065 | 0.68 | 0.932481 |
Target: 5'- -aUAUcGACAGCGCGUUCGgCggGUCCg -3' miRNA: 3'- caGUAaCUGUCGCGCAGGCgG--UAGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 109899 | 0.67 | 0.940567 |
Target: 5'- cGUCGggGGguccCGGCuCGUCCGCCgcggccgccgucgcGUCCCg -3' miRNA: 3'- -CAGUaaCU----GUCGcGCAGGCGG--------------UAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 37159 | 0.67 | 0.941926 |
Target: 5'- aUCGgcGGCAGCaGUGUcagcaacuccgCCGCCGUCaCCg -3' miRNA: 3'- cAGUaaCUGUCG-CGCA-----------GGCGGUAG-GG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 194267 | 0.67 | 0.94631 |
Target: 5'- -aCGUUcGACAGgGCca-CGCCGUCCUg -3' miRNA: 3'- caGUAA-CUGUCgCGcagGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 32260 | 0.66 | 0.973631 |
Target: 5'- aUCAUcgGACGGCuccgaGUGcCCGCUGUCCg -3' miRNA: 3'- cAGUAa-CUGUCG-----CGCaGGCGGUAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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