Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1623 | 3' | -52.5 | NC_001347.2 | + | 31772 | 0.66 | 0.993509 |
|
Target: 5'- -gGGUGCCCACGgacuugGAcCAucucacucugcauuUGGUGCc -3' miRNA: 3'- agCCAUGGGUGCaa----CUaGU--------------ACCACGc -5' |
|||||||
| 1623 | 3' | -52.5 | NC_001347.2 | + | 132740 | 0.67 | 0.989423 |
|
Target: 5'- gUGGUGCUCAUGagggUGugguGUCgAUGGUGCGu -3' miRNA: 3'- aGCCAUGGGUGCa---AC----UAG-UACCACGC- -5' |
|||||||
| 1623 | 3' | -52.5 | NC_001347.2 | + | 178302 | 0.68 | 0.982996 |
|
Target: 5'- uUCGGUgcgGCCCACGc--GUCAgcUGGUGUu -3' miRNA: 3'- -AGCCA---UGGGUGCaacUAGU--ACCACGc -5' |
|||||||
| 1623 | 3' | -52.5 | NC_001347.2 | + | 39150 | 0.68 | 0.981821 |
|
Target: 5'- -aGcGUGCCCGCGUcgcgcugcgaccacuUGcgCAUGGcGCGg -3' miRNA: 3'- agC-CAUGGGUGCA---------------ACuaGUACCaCGC- -5' |
|||||||
| 1623 | 3' | -52.5 | NC_001347.2 | + | 34305 | 0.68 | 0.981005 |
|
Target: 5'- aCGGUGuCgCCAcCGUUGA-CGUGGgcgGCGa -3' miRNA: 3'- aGCCAU-G-GGU-GCAACUaGUACCa--CGC- -5' |
|||||||
| 1623 | 3' | -52.5 | NC_001347.2 | + | 211426 | 0.7 | 0.946017 |
|
Target: 5'- aUGGgACUgAUGUacgaaugUGGUCAUGGUGCGa -3' miRNA: 3'- aGCCaUGGgUGCA-------ACUAGUACCACGC- -5' |
|||||||
| 1623 | 3' | -52.5 | NC_001347.2 | + | 207724 | 0.71 | 0.927316 |
|
Target: 5'- gUCGGUACCUACGUcag-CAUGGaGCc -3' miRNA: 3'- -AGCCAUGGGUGCAacuaGUACCaCGc -5' |
|||||||
| 1623 | 3' | -52.5 | NC_001347.2 | + | 141277 | 1.11 | 0.00801 |
|
Target: 5'- gUCGGUACCCACGUUGAUCAUGGUGCGg -3' miRNA: 3'- -AGCCAUGGGUGCAACUAGUACCACGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home