miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1623 5' -59 NC_001347.2 + 16396 0.66 0.887061
Target:  5'- cGCCGACgCGUUgGCCGCcuGCGuuGGCGAa -3'
miRNA:   3'- -UGGCUGgGUAGaUGGCG--CGC--CCGUUc -5'
1623 5' -59 NC_001347.2 + 182191 0.66 0.887061
Target:  5'- gGCCGGCCC-UCggGgUGCGgGuGGCGGGc -3'
miRNA:   3'- -UGGCUGGGuAGa-UgGCGCgC-CCGUUC- -5'
1623 5' -59 NC_001347.2 + 142268 0.66 0.876349
Target:  5'- cGCUGGCCgCGUCgcugauggacaaguuUGCCGCGUugcaGGaGCAGGg -3'
miRNA:   3'- -UGGCUGG-GUAG---------------AUGGCGCG----CC-CGUUC- -5'
1623 5' -59 NC_001347.2 + 188921 0.66 0.873591
Target:  5'- uCCGGCCCcgacacCUACCuuCGCGGGUAc- -3'
miRNA:   3'- uGGCUGGGua----GAUGGc-GCGCCCGUuc -5'
1623 5' -59 NC_001347.2 + 1564 0.66 0.873591
Target:  5'- cGCgCGACgCGgacgagugguuUCggcACgGCGCGGGCGAGg -3'
miRNA:   3'- -UG-GCUGgGU-----------AGa--UGgCGCGCCCGUUC- -5'
1623 5' -59 NC_001347.2 + 178070 0.66 0.873591
Target:  5'- gACUGAUCCAggcguCgGCGuUGGGCAAGg -3'
miRNA:   3'- -UGGCUGGGUagau-GgCGC-GCCCGUUC- -5'
1623 5' -59 NC_001347.2 + 18937 0.66 0.866559
Target:  5'- cACgGACCUA-CUGCCcacggGCGCGcGCAAGa -3'
miRNA:   3'- -UGgCUGGGUaGAUGG-----CGCGCcCGUUC- -5'
1623 5' -59 NC_001347.2 + 110336 0.66 0.859336
Target:  5'- gACCGACUuaaaCAUCaaggGCCGCugcgugGUGGGCGAa -3'
miRNA:   3'- -UGGCUGG----GUAGa---UGGCG------CGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 197624 0.66 0.859336
Target:  5'- cGCCGACUCG-CUGCCGCagcugcuggaGCGcGGCc-- -3'
miRNA:   3'- -UGGCUGGGUaGAUGGCG----------CGC-CCGuuc -5'
1623 5' -59 NC_001347.2 + 222447 0.66 0.859336
Target:  5'- gGCCGAUCgA-CUGCCGCaugagaGCGGGUg-- -3'
miRNA:   3'- -UGGCUGGgUaGAUGGCG------CGCCCGuuc -5'
1623 5' -59 NC_001347.2 + 152172 0.66 0.857132
Target:  5'- uGCUGucGCCCGUCUuucccggcggcgaaACCGCGCGcaaGGaCAAGu -3'
miRNA:   3'- -UGGC--UGGGUAGA--------------UGGCGCGC---CC-GUUC- -5'
1623 5' -59 NC_001347.2 + 148632 0.66 0.854168
Target:  5'- gGCCGgcgucagcguucgcaGCCCggCU-CCGCGCagggcucGGGCAAGc -3'
miRNA:   3'- -UGGC---------------UGGGuaGAuGGCGCG-------CCCGUUC- -5'
1623 5' -59 NC_001347.2 + 120805 0.67 0.844334
Target:  5'- cCCGACCUguuuuGUCUGCCGCuC-GGCGAa -3'
miRNA:   3'- uGGCUGGG-----UAGAUGGCGcGcCCGUUc -5'
1623 5' -59 NC_001347.2 + 114108 0.67 0.836568
Target:  5'- cGCCGuCCCG-CggguCCGCaCGGGCAAa -3'
miRNA:   3'- -UGGCuGGGUaGau--GGCGcGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 39837 0.67 0.834205
Target:  5'- cCCGACauCCAUUccggGCCGCGUgguggguccucgagGGGCGGGg -3'
miRNA:   3'- uGGCUG--GGUAGa---UGGCGCG--------------CCCGUUC- -5'
1623 5' -59 NC_001347.2 + 166144 0.67 0.828633
Target:  5'- cGCCGcaacGCCCGU--GCC-CGCGGGCcAGg -3'
miRNA:   3'- -UGGC----UGGGUAgaUGGcGCGCCCGuUC- -5'
1623 5' -59 NC_001347.2 + 111955 0.67 0.820535
Target:  5'- cGCCGAUUCAgaUCUACCaugucuuuGgGCGGGCucuGGg -3'
miRNA:   3'- -UGGCUGGGU--AGAUGG--------CgCGCCCGu--UC- -5'
1623 5' -59 NC_001347.2 + 194328 0.67 0.812282
Target:  5'- uUUGACUCGcucucgucgcUCUAuCUGCGCGGGCAGc -3'
miRNA:   3'- uGGCUGGGU----------AGAU-GGCGCGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 208064 0.68 0.795337
Target:  5'- cGuuGGCgCcgCUGCCGCGuCGGGUAc- -3'
miRNA:   3'- -UggCUGgGuaGAUGGCGC-GCCCGUuc -5'
1623 5' -59 NC_001347.2 + 127145 0.68 0.777857
Target:  5'- gACCGcuGCCCGUCUACCGCGUa------ -3'
miRNA:   3'- -UGGC--UGGGUAGAUGGCGCGcccguuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.