miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1623 5' -59 NC_001347.2 + 141311 1.08 0.002653
Target:  5'- aACCGACCCAUCUACCGCGCGGGCAAGg -3'
miRNA:   3'- -UGGCUGGGUAGAUGGCGCGCCCGUUC- -5'
1623 5' -59 NC_001347.2 + 38460 0.79 0.243057
Target:  5'- cGCCGGCCCcgCcgcgcagcccagccACCGCGCGGGCAGc -3'
miRNA:   3'- -UGGCUGGGuaGa-------------UGGCGCGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 124439 0.75 0.373947
Target:  5'- cACCGcuuuACCUAUCUGCCG-GUGGGCAGu -3'
miRNA:   3'- -UGGC----UGGGUAGAUGGCgCGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 39491 0.74 0.430995
Target:  5'- uCCGGCCCcgCgGCCGCGaccaagGGGCGGGg -3'
miRNA:   3'- uGGCUGGGuaGaUGGCGCg-----CCCGUUC- -5'
1623 5' -59 NC_001347.2 + 140764 0.73 0.501997
Target:  5'- -gCGGCUCAUCgaccCCGUGaCGGGCGAGg -3'
miRNA:   3'- ugGCUGGGUAGau--GGCGC-GCCCGUUC- -5'
1623 5' -59 NC_001347.2 + 193889 0.7 0.674938
Target:  5'- cGCgCGAgCCCGUCaUGCCGC-UGGGCGAa -3'
miRNA:   3'- -UG-GCU-GGGUAG-AUGGCGcGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 31121 0.7 0.681712
Target:  5'- uGCCGGCCggCGUCcaggcugcccugguUGCCGCuGCGGGUAAc -3'
miRNA:   3'- -UGGCUGG--GUAG--------------AUGGCG-CGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 208002 0.69 0.703826
Target:  5'- cGCCGaACCgCGUCUgguACCGCuacuGUGGGCGAu -3'
miRNA:   3'- -UGGC-UGG-GUAGA---UGGCG----CGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 65373 0.69 0.731282
Target:  5'- cGCCGugcgucuGCCCGUgagcaccgCUGCCGCGCccgaGGGCAu- -3'
miRNA:   3'- -UGGC-------UGGGUA--------GAUGGCGCG----CCCGUuc -5'
1623 5' -59 NC_001347.2 + 179653 0.69 0.732219
Target:  5'- cACCGGCCaCAgCUACgUGuUGCGGGCAAu -3'
miRNA:   3'- -UGGCUGG-GUaGAUG-GC-GCGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 184939 0.69 0.732219
Target:  5'- aGCCGucugcaGCUCGUCgGCCgGCGUGGGCGGc -3'
miRNA:   3'- -UGGC------UGGGUAGaUGG-CGCGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 23696 0.68 0.777857
Target:  5'- aGCCGGCCauaAUC-ACCGuCGauGGCAGGu -3'
miRNA:   3'- -UGGCUGGg--UAGaUGGC-GCgcCCGUUC- -5'
1623 5' -59 NC_001347.2 + 127145 0.68 0.777857
Target:  5'- gACCGcuGCCCGUCUACCGCGUa------ -3'
miRNA:   3'- -UGGC--UGGGUAGAUGGCGCGcccguuc -5'
1623 5' -59 NC_001347.2 + 208064 0.68 0.795337
Target:  5'- cGuuGGCgCcgCUGCCGCGuCGGGUAc- -3'
miRNA:   3'- -UggCUGgGuaGAUGGCGC-GCCCGUuc -5'
1623 5' -59 NC_001347.2 + 194328 0.67 0.812282
Target:  5'- uUUGACUCGcucucgucgcUCUAuCUGCGCGGGCAGc -3'
miRNA:   3'- uGGCUGGGU----------AGAU-GGCGCGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 111955 0.67 0.820535
Target:  5'- cGCCGAUUCAgaUCUACCaugucuuuGgGCGGGCucuGGg -3'
miRNA:   3'- -UGGCUGGGU--AGAUGG--------CgCGCCCGu--UC- -5'
1623 5' -59 NC_001347.2 + 166144 0.67 0.828633
Target:  5'- cGCCGcaacGCCCGU--GCC-CGCGGGCcAGg -3'
miRNA:   3'- -UGGC----UGGGUAgaUGGcGCGCCCGuUC- -5'
1623 5' -59 NC_001347.2 + 39837 0.67 0.834205
Target:  5'- cCCGACauCCAUUccggGCCGCGUgguggguccucgagGGGCGGGg -3'
miRNA:   3'- uGGCUG--GGUAGa---UGGCGCG--------------CCCGUUC- -5'
1623 5' -59 NC_001347.2 + 114108 0.67 0.836568
Target:  5'- cGCCGuCCCG-CggguCCGCaCGGGCAAa -3'
miRNA:   3'- -UGGCuGGGUaGau--GGCGcGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 120805 0.67 0.844334
Target:  5'- cCCGACCUguuuuGUCUGCCGCuC-GGCGAa -3'
miRNA:   3'- uGGCUGGG-----UAGAUGGCGcGcCCGUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.