Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1623 | 5' | -59 | NC_001347.2 | + | 222447 | 0.66 | 0.859336 |
Target: 5'- gGCCGAUCgA-CUGCCGCaugagaGCGGGUg-- -3' miRNA: 3'- -UGGCUGGgUaGAUGGCG------CGCCCGuuc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 208064 | 0.68 | 0.795337 |
Target: 5'- cGuuGGCgCcgCUGCCGCGuCGGGUAc- -3' miRNA: 3'- -UggCUGgGuaGAUGGCGC-GCCCGUuc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 208002 | 0.69 | 0.703826 |
Target: 5'- cGCCGaACCgCGUCUgguACCGCuacuGUGGGCGAu -3' miRNA: 3'- -UGGC-UGG-GUAGA---UGGCG----CGCCCGUUc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 197624 | 0.66 | 0.859336 |
Target: 5'- cGCCGACUCG-CUGCCGCagcugcuggaGCGcGGCc-- -3' miRNA: 3'- -UGGCUGGGUaGAUGGCG----------CGC-CCGuuc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 194328 | 0.67 | 0.812282 |
Target: 5'- uUUGACUCGcucucgucgcUCUAuCUGCGCGGGCAGc -3' miRNA: 3'- uGGCUGGGU----------AGAU-GGCGCGCCCGUUc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 193889 | 0.7 | 0.674938 |
Target: 5'- cGCgCGAgCCCGUCaUGCCGC-UGGGCGAa -3' miRNA: 3'- -UG-GCU-GGGUAG-AUGGCGcGCCCGUUc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 188921 | 0.66 | 0.873591 |
Target: 5'- uCCGGCCCcgacacCUACCuuCGCGGGUAc- -3' miRNA: 3'- uGGCUGGGua----GAUGGc-GCGCCCGUuc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 184939 | 0.69 | 0.732219 |
Target: 5'- aGCCGucugcaGCUCGUCgGCCgGCGUGGGCGGc -3' miRNA: 3'- -UGGC------UGGGUAGaUGG-CGCGCCCGUUc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 182191 | 0.66 | 0.887061 |
Target: 5'- gGCCGGCCC-UCggGgUGCGgGuGGCGGGc -3' miRNA: 3'- -UGGCUGGGuAGa-UgGCGCgC-CCGUUC- -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 179653 | 0.69 | 0.732219 |
Target: 5'- cACCGGCCaCAgCUACgUGuUGCGGGCAAu -3' miRNA: 3'- -UGGCUGG-GUaGAUG-GC-GCGCCCGUUc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 178070 | 0.66 | 0.873591 |
Target: 5'- gACUGAUCCAggcguCgGCGuUGGGCAAGg -3' miRNA: 3'- -UGGCUGGGUagau-GgCGC-GCCCGUUC- -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 166144 | 0.67 | 0.828633 |
Target: 5'- cGCCGcaacGCCCGU--GCC-CGCGGGCcAGg -3' miRNA: 3'- -UGGC----UGGGUAgaUGGcGCGCCCGuUC- -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 152172 | 0.66 | 0.857132 |
Target: 5'- uGCUGucGCCCGUCUuucccggcggcgaaACCGCGCGcaaGGaCAAGu -3' miRNA: 3'- -UGGC--UGGGUAGA--------------UGGCGCGC---CC-GUUC- -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 148632 | 0.66 | 0.854168 |
Target: 5'- gGCCGgcgucagcguucgcaGCCCggCU-CCGCGCagggcucGGGCAAGc -3' miRNA: 3'- -UGGC---------------UGGGuaGAuGGCGCG-------CCCGUUC- -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 142268 | 0.66 | 0.876349 |
Target: 5'- cGCUGGCCgCGUCgcugauggacaaguuUGCCGCGUugcaGGaGCAGGg -3' miRNA: 3'- -UGGCUGG-GUAG---------------AUGGCGCG----CC-CGUUC- -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 141311 | 1.08 | 0.002653 |
Target: 5'- aACCGACCCAUCUACCGCGCGGGCAAGg -3' miRNA: 3'- -UGGCUGGGUAGAUGGCGCGCCCGUUC- -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 140764 | 0.73 | 0.501997 |
Target: 5'- -gCGGCUCAUCgaccCCGUGaCGGGCGAGg -3' miRNA: 3'- ugGCUGGGUAGau--GGCGC-GCCCGUUC- -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 127145 | 0.68 | 0.777857 |
Target: 5'- gACCGcuGCCCGUCUACCGCGUa------ -3' miRNA: 3'- -UGGC--UGGGUAGAUGGCGCGcccguuc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 124439 | 0.75 | 0.373947 |
Target: 5'- cACCGcuuuACCUAUCUGCCG-GUGGGCAGu -3' miRNA: 3'- -UGGC----UGGGUAGAUGGCgCGCCCGUUc -5' |
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1623 | 5' | -59 | NC_001347.2 | + | 120805 | 0.67 | 0.844334 |
Target: 5'- cCCGACCUguuuuGUCUGCCGCuC-GGCGAa -3' miRNA: 3'- uGGCUGGG-----UAGAUGGCGcGcCCGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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