miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1623 5' -59 NC_001347.2 + 114108 0.67 0.836568
Target:  5'- cGCCGuCCCG-CggguCCGCaCGGGCAAa -3'
miRNA:   3'- -UGGCuGGGUaGau--GGCGcGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 111955 0.67 0.820535
Target:  5'- cGCCGAUUCAgaUCUACCaugucuuuGgGCGGGCucuGGg -3'
miRNA:   3'- -UGGCUGGGU--AGAUGG--------CgCGCCCGu--UC- -5'
1623 5' -59 NC_001347.2 + 110336 0.66 0.859336
Target:  5'- gACCGACUuaaaCAUCaaggGCCGCugcgugGUGGGCGAa -3'
miRNA:   3'- -UGGCUGG----GUAGa---UGGCG------CGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 65373 0.69 0.731282
Target:  5'- cGCCGugcgucuGCCCGUgagcaccgCUGCCGCGCccgaGGGCAu- -3'
miRNA:   3'- -UGGC-------UGGGUA--------GAUGGCGCG----CCCGUuc -5'
1623 5' -59 NC_001347.2 + 39837 0.67 0.834205
Target:  5'- cCCGACauCCAUUccggGCCGCGUgguggguccucgagGGGCGGGg -3'
miRNA:   3'- uGGCUG--GGUAGa---UGGCGCG--------------CCCGUUC- -5'
1623 5' -59 NC_001347.2 + 39491 0.74 0.430995
Target:  5'- uCCGGCCCcgCgGCCGCGaccaagGGGCGGGg -3'
miRNA:   3'- uGGCUGGGuaGaUGGCGCg-----CCCGUUC- -5'
1623 5' -59 NC_001347.2 + 38460 0.79 0.243057
Target:  5'- cGCCGGCCCcgCcgcgcagcccagccACCGCGCGGGCAGc -3'
miRNA:   3'- -UGGCUGGGuaGa-------------UGGCGCGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 31121 0.7 0.681712
Target:  5'- uGCCGGCCggCGUCcaggcugcccugguUGCCGCuGCGGGUAAc -3'
miRNA:   3'- -UGGCUGG--GUAG--------------AUGGCG-CGCCCGUUc -5'
1623 5' -59 NC_001347.2 + 23696 0.68 0.777857
Target:  5'- aGCCGGCCauaAUC-ACCGuCGauGGCAGGu -3'
miRNA:   3'- -UGGCUGGg--UAGaUGGC-GCgcCCGUUC- -5'
1623 5' -59 NC_001347.2 + 18937 0.66 0.866559
Target:  5'- cACgGACCUA-CUGCCcacggGCGCGcGCAAGa -3'
miRNA:   3'- -UGgCUGGGUaGAUGG-----CGCGCcCGUUC- -5'
1623 5' -59 NC_001347.2 + 16396 0.66 0.887061
Target:  5'- cGCCGACgCGUUgGCCGCcuGCGuuGGCGAa -3'
miRNA:   3'- -UGGCUGgGUAGaUGGCG--CGC--CCGUUc -5'
1623 5' -59 NC_001347.2 + 1564 0.66 0.873591
Target:  5'- cGCgCGACgCGgacgagugguuUCggcACgGCGCGGGCGAGg -3'
miRNA:   3'- -UG-GCUGgGU-----------AGa--UGgCGCGCCCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.