Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16230 | 3' | -60.1 | NC_004065.1 | + | 64339 | 0.68 | 0.721051 |
Target: 5'- cACaCGAGGCCCUggGA--UGGCAGa- -3' miRNA: 3'- -UGgGCUCCGGGGuuCUagACCGUCcu -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 24507 | 0.69 | 0.663371 |
Target: 5'- gGCCCuGAgcgccGGCCCCAAGA--UGGCGGcGGc -3' miRNA: 3'- -UGGG-CU-----CCGGGGUUCUagACCGUC-CU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 121603 | 0.69 | 0.653632 |
Target: 5'- gGCCCGGGaCCCCccGGUagGGCAGGAu -3' miRNA: 3'- -UGGGCUCcGGGGuuCUAgaCCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 226025 | 0.69 | 0.643879 |
Target: 5'- gUCUGAGGUCCCGAGGacUCgGGCGGa- -3' miRNA: 3'- uGGGCUCCGGGGUUCU--AGaCCGUCcu -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 136422 | 0.69 | 0.634116 |
Target: 5'- uCCUGGGGgCCCGgugagccgAGGUCgguaGGCGGGAa -3' miRNA: 3'- uGGGCUCCgGGGU--------UCUAGa---CCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 197837 | 0.7 | 0.595122 |
Target: 5'- gUCC-AGGUCCCAGGggC-GGCAGGAg -3' miRNA: 3'- uGGGcUCCGGGGUUCuaGaCCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 225592 | 0.7 | 0.595122 |
Target: 5'- aGCUCGAGGCCCgAGGGUCaGcGuCAGGc -3' miRNA: 3'- -UGGGCUCCGGGgUUCUAGaC-C-GUCCu -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 81543 | 0.72 | 0.497367 |
Target: 5'- gACCCGAGGaucacgcgccacguCCCCGAGAUCUGcauGCuguacaAGGAg -3' miRNA: 3'- -UGGGCUCC--------------GGGGUUCUAGAC---CG------UCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 82329 | 0.73 | 0.446401 |
Target: 5'- uGCCCGAGGCCgUAgccguagaaggaGGAUUUGGUgacGGGAg -3' miRNA: 3'- -UGGGCUCCGGgGU------------UCUAGACCG---UCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 68566 | 0.73 | 0.429216 |
Target: 5'- uCCCGaAGGCCCgGAGcUCUcaGGUAGGAa -3' miRNA: 3'- uGGGC-UCCGGGgUUCuAGA--CCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 196903 | 0.73 | 0.412427 |
Target: 5'- gUCCGGGGCCaCCAGGAUCaUGGCGu-- -3' miRNA: 3'- uGGGCUCCGG-GGUUCUAG-ACCGUccu -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 1957 | 0.74 | 0.364581 |
Target: 5'- uGCCCcccgugaugaggGAGGCCCgAcgcuAGAUCUGGCuGGAu -3' miRNA: 3'- -UGGG------------CUCCGGGgU----UCUAGACCGuCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 223447 | 1.08 | 0.002017 |
Target: 5'- gACCCGAGGCCCCAAGAUCUGGCAGGAg -3' miRNA: 3'- -UGGGCUCCGGGGUUCUAGACCGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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