Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16230 | 3' | -60.1 | NC_004065.1 | + | 121603 | 0.69 | 0.653632 |
Target: 5'- gGCCCGGGaCCCCccGGUagGGCAGGAu -3' miRNA: 3'- -UGGGCUCcGGGGuuCUAgaCCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 81543 | 0.72 | 0.497367 |
Target: 5'- gACCCGAGGaucacgcgccacguCCCCGAGAUCUGcauGCuguacaAGGAg -3' miRNA: 3'- -UGGGCUCC--------------GGGGUUCUAGAC---CG------UCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 68566 | 0.73 | 0.429216 |
Target: 5'- uCCCGaAGGCCCgGAGcUCUcaGGUAGGAa -3' miRNA: 3'- uGGGC-UCCGGGgUUCuAGA--CCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 1957 | 0.74 | 0.364581 |
Target: 5'- uGCCCcccgugaugaggGAGGCCCgAcgcuAGAUCUGGCuGGAu -3' miRNA: 3'- -UGGG------------CUCCGGGgU----UCUAGACCGuCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 189887 | 0.66 | 0.793767 |
Target: 5'- --aCGAGGCCgCCGucuGGAUCgacgaacacGGCAGGGu -3' miRNA: 3'- uggGCUCCGG-GGU---UCUAGa--------CCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 104778 | 0.66 | 0.793767 |
Target: 5'- gACCCGGcGGCCUCGAGA-CgGGCAu-- -3' miRNA: 3'- -UGGGCU-CCGGGGUUCUaGaCCGUccu -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 36418 | 0.66 | 0.835163 |
Target: 5'- gACCUGGugaacGGCUCCAcggucaAGGUCUGGCGaGAc -3' miRNA: 3'- -UGGGCU-----CCGGGGU------UCUAGACCGUcCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 136588 | 0.66 | 0.819061 |
Target: 5'- uCCUGcGGUCCgGGGAUCcGGguGGGg -3' miRNA: 3'- uGGGCuCCGGGgUUCUAGaCCguCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 140684 | 0.66 | 0.802341 |
Target: 5'- gGCCUGucGuGCCUCGAGuUCUGGCAGc- -3' miRNA: 3'- -UGGGCu-C-CGGGGUUCuAGACCGUCcu -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 136489 | 0.67 | 0.767279 |
Target: 5'- -gCCGAGGCCgguagCCGGGGagCUGGUccGGGAa -3' miRNA: 3'- ugGGCUCCGG-----GGUUCUa-GACCG--UCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 64339 | 0.68 | 0.721051 |
Target: 5'- cACaCGAGGCCCUggGA--UGGCAGa- -3' miRNA: 3'- -UGgGCUCCGGGGuuCUagACCGUCcu -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 71005 | 0.66 | 0.835163 |
Target: 5'- gACCCGAGGUCUCuGGAgggaUGGUaauuccccucacGGGAc -3' miRNA: 3'- -UGGGCUCCGGGGuUCUag--ACCG------------UCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 142553 | 0.67 | 0.749061 |
Target: 5'- uGCCCGguggcGGGUCCgGAGAUCUauCGGGAg -3' miRNA: 3'- -UGGGC-----UCCGGGgUUCUAGAccGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 195794 | 0.66 | 0.809938 |
Target: 5'- gACCgCG-GGCCCUgcgcugaAGGGUCgGGUGGGAc -3' miRNA: 3'- -UGG-GCuCCGGGG-------UUCUAGaCCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 207999 | 0.66 | 0.835163 |
Target: 5'- uGCCCGGGGCCguggCCGGGuuagugCcGGCGGcGAu -3' miRNA: 3'- -UGGGCUCCGG----GGUUCua----GaCCGUC-CU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 136422 | 0.69 | 0.634116 |
Target: 5'- uCCUGGGGgCCCGgugagccgAGGUCgguaGGCGGGAa -3' miRNA: 3'- uGGGCUCCgGGGU--------UCUAGa---CCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 189 | 0.67 | 0.776229 |
Target: 5'- uUCCGAGaaguuCCCCuuuucugggAAGAuUCUGGCGGGAa -3' miRNA: 3'- uGGGCUCc----GGGG---------UUCU-AGACCGUCCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 91154 | 0.67 | 0.76728 |
Target: 5'- uGCUCGAGGaCCCAcGGAUCgucGCAGGc -3' miRNA: 3'- -UGGGCUCCgGGGU-UCUAGac-CGUCCu -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 50857 | 0.67 | 0.766378 |
Target: 5'- gGCgCGGGGCCUCugacggaGAGAUCgacgGGCAcGGGc -3' miRNA: 3'- -UGgGCUCCGGGG-------UUCUAGa---CCGU-CCU- -5' |
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16230 | 3' | -60.1 | NC_004065.1 | + | 30120 | 0.67 | 0.758221 |
Target: 5'- cCCCGGcGGCCUgGGGAg--GGCGGGu -3' miRNA: 3'- uGGGCU-CCGGGgUUCUagaCCGUCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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