miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16230 5' -58.8 NC_004065.1 + 35233 0.65 0.922006
Target:  5'- aGGggCUCGAcgaucgcccugcgcGACCcgGUCUCGGGA-CGGCg -3'
miRNA:   3'- -CCa-GGGCU--------------CUGG--CAGAGCCCUgGUCG- -5'
16230 5' -58.8 NC_004065.1 + 180023 0.66 0.918323
Target:  5'- uGUCCCG-GACuCGUCUCGc-ACCGuGCg -3'
miRNA:   3'- cCAGGGCuCUG-GCAGAGCccUGGU-CG- -5'
16230 5' -58.8 NC_004065.1 + 109885 0.66 0.918323
Target:  5'- cGUCgCCGcGGCCGcgUCGGGGggucCCGGCu -3'
miRNA:   3'- cCAG-GGCuCUGGCagAGCCCU----GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 55583 0.66 0.918323
Target:  5'- cGGUCCC---GCCGUCggacaCGaGGAUgGGCg -3'
miRNA:   3'- -CCAGGGcucUGGCAGa----GC-CCUGgUCG- -5'
16230 5' -58.8 NC_004065.1 + 17282 0.66 0.912885
Target:  5'- --gCCgGAGGUgGUgUCGGGugCGGCg -3'
miRNA:   3'- ccaGGgCUCUGgCAgAGCCCugGUCG- -5'
16230 5' -58.8 NC_004065.1 + 229617 0.66 0.912885
Target:  5'- --cCCCGGGcgcggaaaaacACCGUCUCGuGcgccaucccGGCCGGCg -3'
miRNA:   3'- ccaGGGCUC-----------UGGCAGAGC-C---------CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 18529 0.66 0.912885
Target:  5'- uGGUgCaCGGGAUCGUCacCGGGcGCCuGGCu -3'
miRNA:   3'- -CCAgG-GCUCUGGCAGa-GCCC-UGG-UCG- -5'
16230 5' -58.8 NC_004065.1 + 191968 0.66 0.91233
Target:  5'- uGUCCgGcGGCaCGUUggacgggUCGuGGGCCAGCa -3'
miRNA:   3'- cCAGGgCuCUG-GCAG-------AGC-CCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 19295 0.66 0.907238
Target:  5'- gGGaUCUG-GACCGUC-CGGcGACgGGCg -3'
miRNA:   3'- -CCaGGGCuCUGGCAGaGCC-CUGgUCG- -5'
16230 5' -58.8 NC_004065.1 + 194776 0.66 0.907238
Target:  5'- cGUCCCGAGACCGggucgCgcaGGGcgaucguCgAGCc -3'
miRNA:   3'- cCAGGGCUCUGGCa----Gag-CCCu------GgUCG- -5'
16230 5' -58.8 NC_004065.1 + 110571 0.66 0.907238
Target:  5'- cGGUCCgCcAGGCgucgGUCUCGGcGACCAccacGCg -3'
miRNA:   3'- -CCAGG-GcUCUGg---CAGAGCC-CUGGU----CG- -5'
16230 5' -58.8 NC_004065.1 + 195175 0.66 0.901385
Target:  5'- cGGaUCUCG-GAgCGUCUcugCGGGAUCAGg -3'
miRNA:   3'- -CC-AGGGCuCUgGCAGA---GCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 7567 0.66 0.901385
Target:  5'- cGUCUgCGuaucGugCGUCgUCGGGuCCGGCg -3'
miRNA:   3'- cCAGG-GCu---CugGCAG-AGCCCuGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 143290 0.66 0.901385
Target:  5'- aGGg-CCGAGGCggCGUCg-GGGGCCGGg -3'
miRNA:   3'- -CCagGGCUCUG--GCAGagCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 149779 0.66 0.900789
Target:  5'- uGGUUUucaacgaCGAGACCGUUUCggagGGGACUaugaAGCu -3'
miRNA:   3'- -CCAGG-------GCUCUGGCAGAG----CCCUGG----UCG- -5'
16230 5' -58.8 NC_004065.1 + 1580 0.66 0.895328
Target:  5'- cGGUCCCGu--UCGUCcccuacgCGGGuAUCGGCc -3'
miRNA:   3'- -CCAGGGCucuGGCAGa------GCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 113884 0.66 0.895328
Target:  5'- cGGcCCCGAG-CCGcCgcaGGacgccGACCAGCu -3'
miRNA:   3'- -CCaGGGCUCuGGCaGag-CC-----CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 67486 0.66 0.895328
Target:  5'- aGUCUCGAGAgcCCGUC-CGaGACCuGGCc -3'
miRNA:   3'- cCAGGGCUCU--GGCAGaGCcCUGG-UCG- -5'
16230 5' -58.8 NC_004065.1 + 142564 0.66 0.895328
Target:  5'- gGGUCCgGAGAUCua-UCGGGAgaCGGUc -3'
miRNA:   3'- -CCAGGgCUCUGGcagAGCCCUg-GUCG- -5'
16230 5' -58.8 NC_004065.1 + 96307 0.66 0.895328
Target:  5'- cGUCCacacGGAcuCCGUCUCGGGGuCCAaggGCu -3'
miRNA:   3'- cCAGGgc--UCU--GGCAGAGCCCU-GGU---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.