Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16230 | 5' | -58.8 | NC_004065.1 | + | 127601 | 0.68 | 0.832188 |
Target: 5'- --gCCU---ACCGcugCUCGGGACCGGCg -3' miRNA: 3'- ccaGGGcucUGGCa--GAGCCCUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 133068 | 0.68 | 0.816259 |
Target: 5'- cGGUUCCcucggcGAG-CUGgacCUCGGGAUCGGCc -3' miRNA: 3'- -CCAGGG------CUCuGGCa--GAGCCCUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 168009 | 0.68 | 0.816259 |
Target: 5'- --cUCCGucGACgCGUCUCGGG-CCGGUu -3' miRNA: 3'- ccaGGGCu-CUG-GCAGAGCCCuGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 202156 | 0.68 | 0.832188 |
Target: 5'- aGGUCCCG--GCCGUCcaUCucGACCAGUu -3' miRNA: 3'- -CCAGGGCucUGGCAG--AGccCUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 192089 | 0.68 | 0.847478 |
Target: 5'- cGGgaugUUCGAGACgCGa---GGGACCAGCa -3' miRNA: 3'- -CCa---GGGCUCUG-GCagagCCCUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 50282 | 0.68 | 0.832188 |
Target: 5'- gGGcCCCGAGACCGcCguccgcgCGGcGAUC-GCg -3' miRNA: 3'- -CCaGGGCUCUGGCaGa------GCC-CUGGuCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 26898 | 0.68 | 0.839916 |
Target: 5'- cGGUCCaGAGGCCG-CUCGaccgcacgccGGACCccgaagaaGGCu -3' miRNA: 3'- -CCAGGgCUCUGGCaGAGC----------CCUGG--------UCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 223710 | 0.68 | 0.839916 |
Target: 5'- --aCCgCGAuucgcuaGCCGUCUCagccuGGGACCGGCg -3' miRNA: 3'- ccaGG-GCUc------UGGCAGAG-----CCCUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 128738 | 0.68 | 0.847478 |
Target: 5'- uGGcCCCGAGgcaGCCGUCggcagCGGcAgCGGCa -3' miRNA: 3'- -CCaGGGCUC---UGGCAGa----GCCcUgGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 184909 | 0.68 | 0.847478 |
Target: 5'- cGGgcgCCCGGG-UgG-CUCGGGAgCGGCc -3' miRNA: 3'- -CCa--GGGCUCuGgCaGAGCCCUgGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 43545 | 0.69 | 0.798902 |
Target: 5'- cGUCCCGcuccGGAUCGUagUCGGGACUccagacgGGCc -3' miRNA: 3'- cCAGGGC----UCUGGCAg-AGCCCUGG-------UCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 197539 | 0.69 | 0.782694 |
Target: 5'- ---aCCGAGAUCGUCaaGGGACacuGGCg -3' miRNA: 3'- ccagGGCUCUGGCAGagCCCUGg--UCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 98684 | 0.69 | 0.781829 |
Target: 5'- cGUCCCGAucgacggGAcCCGUCaUgGGGAcgcCCAGCu -3' miRNA: 3'- cCAGGGCU-------CU-GGCAG-AgCCCU---GGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 131783 | 0.69 | 0.765171 |
Target: 5'- cGUCCCGAG-CCGUCgUCGGcACCcuCg -3' miRNA: 3'- cCAGGGCUCuGGCAG-AGCCcUGGucG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 188610 | 0.69 | 0.765171 |
Target: 5'- cGGUCCgucaCGGGACCGUgUCgccGGcGGCgAGCa -3' miRNA: 3'- -CCAGG----GCUCUGGCAgAG---CC-CUGgUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 204193 | 0.69 | 0.765171 |
Target: 5'- cGGUaCUCGAGACCG--UCGGGAugauagUCGGCc -3' miRNA: 3'- -CCA-GGGCUCUGGCagAGCCCU------GGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 203163 | 0.69 | 0.782694 |
Target: 5'- --aCCCGAgGACCGUCUCucGAcuuCCAGCu -3' miRNA: 3'- ccaGGGCU-CUGGCAGAGccCU---GGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 95181 | 0.7 | 0.72894 |
Target: 5'- gGGUCCaGGGcCCGUCUCcGGGGgaGGCc -3' miRNA: 3'- -CCAGGgCUCuGGCAGAG-CCCUggUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 130867 | 0.7 | 0.700968 |
Target: 5'- --aCUgGAGACCaGcCUCGGGcGCCGGCg -3' miRNA: 3'- ccaGGgCUCUGG-CaGAGCCC-UGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 221205 | 0.7 | 0.719679 |
Target: 5'- cGagCCGAGACCGUUgguugUGGuGAUCGGCg -3' miRNA: 3'- cCagGGCUCUGGCAGa----GCC-CUGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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