miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16230 5' -58.8 NC_004065.1 + 223481 1.14 0.001524
Target:  5'- cGGUCCCGAGACCGUCUCGGGACCAGCa -3'
miRNA:   3'- -CCAGGGCUCUGGCAGAGCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 6545 1.02 0.009173
Target:  5'- uGGUCCCGAGACgGUCUCGGGACCGGUg -3'
miRNA:   3'- -CCAGGGCUCUGgCAGAGCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 115904 0.77 0.339356
Target:  5'- cGG-CUCGGGGCCGUCgUCGGccucGGCCGGCa -3'
miRNA:   3'- -CCaGGGCUCUGGCAG-AGCC----CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 205520 0.75 0.432666
Target:  5'- -aUCuuGGGGCCGgcgCUCaGGGCCGGCg -3'
miRNA:   3'- ccAGggCUCUGGCa--GAGcCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 152040 0.75 0.449619
Target:  5'- cGUCCCGGGGCgG-CUCGccgcGGCCAGCg -3'
miRNA:   3'- cCAGGGCUCUGgCaGAGCc---CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 193075 0.75 0.466932
Target:  5'- uGGUCUCGAGACaCGgaUCGGGACCuGg -3'
miRNA:   3'- -CCAGGGCUCUG-GCagAGCCCUGGuCg -5'
16230 5' -58.8 NC_004065.1 + 23138 0.73 0.548632
Target:  5'- cGGUCCCGGGAgaaucccacucaCCGgcgaCUCGuaACCAGCg -3'
miRNA:   3'- -CCAGGGCUCU------------GGCa---GAGCccUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 116143 0.73 0.558017
Target:  5'- cGUCCUGcGGCgG-CUCGGGGCCGGg -3'
miRNA:   3'- cCAGGGCuCUGgCaGAGCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 207994 0.73 0.567446
Target:  5'- cGGccugCCCGGGGCCGUggcCGGGuuaguGCCGGCg -3'
miRNA:   3'- -CCa---GGGCUCUGGCAga-GCCC-----UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 114891 0.73 0.567446
Target:  5'- cGGUUCCGAGGCCaucaUCUCGGuGGCUccgggggguggGGCg -3'
miRNA:   3'- -CCAGGGCUCUGGc---AGAGCC-CUGG-----------UCG- -5'
16230 5' -58.8 NC_004065.1 + 141462 0.73 0.576916
Target:  5'- --cCCCGAGAUCGacgacauccucuUCUaCGuGGACCAGCa -3'
miRNA:   3'- ccaGGGCUCUGGC------------AGA-GC-CCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 119450 0.71 0.653429
Target:  5'- uGGUCgCCGAGACCGacgcCUgGcGGACCgccgaAGCg -3'
miRNA:   3'- -CCAG-GGCUCUGGCa---GAgC-CCUGG-----UCG- -5'
16230 5' -58.8 NC_004065.1 + 210908 0.71 0.662995
Target:  5'- -cUUCCG-GACCGUCUCGuGGCCGGa -3'
miRNA:   3'- ccAGGGCuCUGGCAGAGCcCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 22222 0.71 0.662995
Target:  5'- cGGUCgCGAuGACCGUCaUCGu-GCCGGCg -3'
miRNA:   3'- -CCAGgGCU-CUGGCAG-AGCccUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 139476 0.71 0.672539
Target:  5'- aGGUUCgagGGGGCCGUCgggCGGGACgAGa -3'
miRNA:   3'- -CCAGGg--CUCUGGCAGa--GCCCUGgUCg -5'
16230 5' -58.8 NC_004065.1 + 165873 0.71 0.672539
Target:  5'- --cUCCGAGACCaggUCGGcGGCCAGCg -3'
miRNA:   3'- ccaGGGCUCUGGcagAGCC-CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 146601 0.71 0.672539
Target:  5'- uGGcCaUCGGGGCCGUCggCGGGGCCGuGUc -3'
miRNA:   3'- -CCaG-GGCUCUGGCAGa-GCCCUGGU-CG- -5'
16230 5' -58.8 NC_004065.1 + 174450 0.71 0.691533
Target:  5'- uGUCCgacggCGGGACCGUCUacuacgucgaccCGGGGCaCGGUa -3'
miRNA:   3'- cCAGG-----GCUCUGGCAGA------------GCCCUG-GUCG- -5'
16230 5' -58.8 NC_004065.1 + 98243 0.71 0.691533
Target:  5'- gGGUgCCGAcGACgG-CUCGGGACggCGGCc -3'
miRNA:   3'- -CCAgGGCU-CUGgCaGAGCCCUG--GUCG- -5'
16230 5' -58.8 NC_004065.1 + 130867 0.7 0.700968
Target:  5'- --aCUgGAGACCaGcCUCGGGcGCCGGCg -3'
miRNA:   3'- ccaGGgCUCUGG-CaGAGCCC-UGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.