miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16230 5' -58.8 NC_004065.1 + 165827 0.67 0.889069
Target:  5'- aGUUCCuugaAGACCGUCacuagggacggCGGGGCCGGa -3'
miRNA:   3'- cCAGGGc---UCUGGCAGa----------GCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 81605 0.67 0.887152
Target:  5'- aGGUgCCGAaGCCGgccuugcccuUCUCGGGGCUgaagacgaacauucGGCc -3'
miRNA:   3'- -CCAgGGCUcUGGC----------AGAGCCCUGG--------------UCG- -5'
16230 5' -58.8 NC_004065.1 + 91836 0.67 0.887152
Target:  5'- cGGUcgCCCGuGGCCGUuguuguuguugaucCUCGccACCAGCg -3'
miRNA:   3'- -CCA--GGGCuCUGGCA--------------GAGCccUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 203098 0.67 0.882611
Target:  5'- cGGUCUCuuGAG-CCuUCuUCGGGGuCCGGCg -3'
miRNA:   3'- -CCAGGG--CUCuGGcAG-AGCCCU-GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 136593 0.67 0.875957
Target:  5'- cGGUCCgGGGAuCCGggUgGGGugCGGg -3'
miRNA:   3'- -CCAGGgCUCU-GGCagAgCCCugGUCg -5'
16230 5' -58.8 NC_004065.1 + 94228 0.67 0.875957
Target:  5'- uGGUCCCGAcGCCaUUUUGGuGGCCuccGCc -3'
miRNA:   3'- -CCAGGGCUcUGGcAGAGCC-CUGGu--CG- -5'
16230 5' -58.8 NC_004065.1 + 93443 0.67 0.875957
Target:  5'- cGGaUCCCcGGACCG-Ca--GGACCAGCu -3'
miRNA:   3'- -CC-AGGGcUCUGGCaGagcCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 50580 0.67 0.869113
Target:  5'- -aUCCuCGAGcacccuACUGUCuUCGGGcGCCGGCc -3'
miRNA:   3'- ccAGG-GCUC------UGGCAG-AGCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 207767 0.67 0.869113
Target:  5'- gGGUUCCGguuucucgucgGGACCaUgUUGGGcGCCGGCa -3'
miRNA:   3'- -CCAGGGC-----------UCUGGcAgAGCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 220404 0.67 0.869113
Target:  5'- cGGUCgaCGAGAUUuuccaaUCUCuGGGAUCAGCu -3'
miRNA:   3'- -CCAGg-GCUCUGGc-----AGAG-CCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 104183 0.67 0.868418
Target:  5'- cGGUgCCGGauacGACCGUCagcaagaUCGuGAUCAGCg -3'
miRNA:   3'- -CCAgGGCU----CUGGCAG-------AGCcCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 118158 0.67 0.862082
Target:  5'- uGUCaCCGAGACCG-CggCGGcGGCCgucacGGCu -3'
miRNA:   3'- cCAG-GGCUCUGGCaGa-GCC-CUGG-----UCG- -5'
16230 5' -58.8 NC_004065.1 + 18165 0.67 0.859937
Target:  5'- cGUCCgCGGGGCguUCUCGGGACgaaucugagcuggaCGGCu -3'
miRNA:   3'- cCAGG-GCUCUGgcAGAGCCCUG--------------GUCG- -5'
16230 5' -58.8 NC_004065.1 + 166938 0.67 0.854868
Target:  5'- aGGUCCaacGcCCGUCgcucgcCGGcGACCGGCg -3'
miRNA:   3'- -CCAGGgcuCuGGCAGa-----GCC-CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 159818 0.67 0.854868
Target:  5'- aGGUCUCGuu-CCGUCUCcGGcAgCAGCa -3'
miRNA:   3'- -CCAGGGCucuGGCAGAGcCC-UgGUCG- -5'
16230 5' -58.8 NC_004065.1 + 36949 0.67 0.854868
Target:  5'- aGGUCCCGAu-CCGugUCUCGaGACCAu- -3'
miRNA:   3'- -CCAGGGCUcuGGC--AGAGCcCUGGUcg -5'
16230 5' -58.8 NC_004065.1 + 180854 0.67 0.854137
Target:  5'- --aCCCGAGAUCGUCccuuaccaggacaUCGGGGa-GGCu -3'
miRNA:   3'- ccaGGGCUCUGGCAG-------------AGCCCUggUCG- -5'
16230 5' -58.8 NC_004065.1 + 40489 0.68 0.847478
Target:  5'- gGGUCC--AGGCCG-CUCGcGGGCUauAGCa -3'
miRNA:   3'- -CCAGGgcUCUGGCaGAGC-CCUGG--UCG- -5'
16230 5' -58.8 NC_004065.1 + 128738 0.68 0.847478
Target:  5'- uGGcCCCGAGgcaGCCGUCggcagCGGcAgCGGCa -3'
miRNA:   3'- -CCaGGGCUC---UGGCAGa----GCCcUgGUCG- -5'
16230 5' -58.8 NC_004065.1 + 192089 0.68 0.847478
Target:  5'- cGGgaugUUCGAGACgCGa---GGGACCAGCa -3'
miRNA:   3'- -CCa---GGGCUCUG-GCagagCCCUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.