miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16230 5' -58.8 NC_004065.1 + 1580 0.66 0.895328
Target:  5'- cGGUCCCGu--UCGUCcccuacgCGGGuAUCGGCc -3'
miRNA:   3'- -CCAGGGCucuGGCAGa------GCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 6545 1.02 0.009173
Target:  5'- uGGUCCCGAGACgGUCUCGGGACCGGUg -3'
miRNA:   3'- -CCAGGGCUCUGgCAGAGCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 7567 0.66 0.901385
Target:  5'- cGUCUgCGuaucGugCGUCgUCGGGuCCGGCg -3'
miRNA:   3'- cCAGG-GCu---CugGCAG-AGCCCuGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 17282 0.66 0.912885
Target:  5'- --gCCgGAGGUgGUgUCGGGugCGGCg -3'
miRNA:   3'- ccaGGgCUCUGgCAgAGCCCugGUCG- -5'
16230 5' -58.8 NC_004065.1 + 18165 0.67 0.859937
Target:  5'- cGUCCgCGGGGCguUCUCGGGACgaaucugagcuggaCGGCu -3'
miRNA:   3'- cCAGG-GCUCUGgcAGAGCCCUG--------------GUCG- -5'
16230 5' -58.8 NC_004065.1 + 18529 0.66 0.912885
Target:  5'- uGGUgCaCGGGAUCGUCacCGGGcGCCuGGCu -3'
miRNA:   3'- -CCAgG-GCUCUGGCAGa-GCCC-UGG-UCG- -5'
16230 5' -58.8 NC_004065.1 + 19295 0.66 0.907238
Target:  5'- gGGaUCUG-GACCGUC-CGGcGACgGGCg -3'
miRNA:   3'- -CCaGGGCuCUGGCAGaGCC-CUGgUCG- -5'
16230 5' -58.8 NC_004065.1 + 22222 0.71 0.662995
Target:  5'- cGGUCgCGAuGACCGUCaUCGu-GCCGGCg -3'
miRNA:   3'- -CCAGgGCU-CUGGCAG-AGCccUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 23138 0.73 0.548632
Target:  5'- cGGUCCCGGGAgaaucccacucaCCGgcgaCUCGuaACCAGCg -3'
miRNA:   3'- -CCAGGGCUCU------------GGCa---GAGCccUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 26898 0.68 0.839916
Target:  5'- cGGUCCaGAGGCCG-CUCGaccgcacgccGGACCccgaagaaGGCu -3'
miRNA:   3'- -CCAGGgCUCUGGCaGAGC----------CCUGG--------UCG- -5'
16230 5' -58.8 NC_004065.1 + 35233 0.65 0.922006
Target:  5'- aGGggCUCGAcgaucgcccugcgcGACCcgGUCUCGGGA-CGGCg -3'
miRNA:   3'- -CCa-GGGCU--------------CUGG--CAGAGCCCUgGUCG- -5'
16230 5' -58.8 NC_004065.1 + 36949 0.67 0.854868
Target:  5'- aGGUCCCGAu-CCGugUCUCGaGACCAu- -3'
miRNA:   3'- -CCAGGGCUcuGGC--AGAGCcCUGGUcg -5'
16230 5' -58.8 NC_004065.1 + 40489 0.68 0.847478
Target:  5'- gGGUCC--AGGCCG-CUCGcGGGCUauAGCa -3'
miRNA:   3'- -CCAGGgcUCUGGCaGAGC-CCUGG--UCG- -5'
16230 5' -58.8 NC_004065.1 + 43545 0.69 0.798902
Target:  5'- cGUCCCGcuccGGAUCGUagUCGGGACUccagacgGGCc -3'
miRNA:   3'- cCAGGGC----UCUGGCAg-AGCCCUGG-------UCG- -5'
16230 5' -58.8 NC_004065.1 + 50282 0.68 0.832188
Target:  5'- gGGcCCCGAGACCGcCguccgcgCGGcGAUC-GCg -3'
miRNA:   3'- -CCaGGGCUCUGGCaGa------GCC-CUGGuCG- -5'
16230 5' -58.8 NC_004065.1 + 50580 0.67 0.869113
Target:  5'- -aUCCuCGAGcacccuACUGUCuUCGGGcGCCGGCc -3'
miRNA:   3'- ccAGG-GCUC------UGGCAG-AGCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 55583 0.66 0.918323
Target:  5'- cGGUCCC---GCCGUCggacaCGaGGAUgGGCg -3'
miRNA:   3'- -CCAGGGcucUGGCAGa----GC-CCUGgUCG- -5'
16230 5' -58.8 NC_004065.1 + 67486 0.66 0.895328
Target:  5'- aGUCUCGAGAgcCCGUC-CGaGACCuGGCc -3'
miRNA:   3'- cCAGGGCUCU--GGCAGaGCcCUGG-UCG- -5'
16230 5' -58.8 NC_004065.1 + 78044 0.68 0.8243
Target:  5'- gGGUCCCugauGAGGCCGg--CGGGGC--GCa -3'
miRNA:   3'- -CCAGGG----CUCUGGCagaGCCCUGguCG- -5'
16230 5' -58.8 NC_004065.1 + 81605 0.67 0.887152
Target:  5'- aGGUgCCGAaGCCGgccuugcccuUCUCGGGGCUgaagacgaacauucGGCc -3'
miRNA:   3'- -CCAgGGCUcUGGC----------AGAGCCCUGG--------------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.