miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16230 5' -58.8 NC_004065.1 + 130867 0.7 0.700968
Target:  5'- --aCUgGAGACCaGcCUCGGGcGCCGGCg -3'
miRNA:   3'- ccaGGgCUCUGG-CaGAGCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 131783 0.69 0.765171
Target:  5'- cGUCCCGAG-CCGUCgUCGGcACCcuCg -3'
miRNA:   3'- cCAGGGCUCuGGCAG-AGCCcUGGucG- -5'
16230 5' -58.8 NC_004065.1 + 133068 0.68 0.816259
Target:  5'- cGGUUCCcucggcGAG-CUGgacCUCGGGAUCGGCc -3'
miRNA:   3'- -CCAGGG------CUCuGGCa--GAGCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 136593 0.67 0.875957
Target:  5'- cGGUCCgGGGAuCCGggUgGGGugCGGg -3'
miRNA:   3'- -CCAGGgCUCU-GGCagAgCCCugGUCg -5'
16230 5' -58.8 NC_004065.1 + 139476 0.71 0.672539
Target:  5'- aGGUUCgagGGGGCCGUCgggCGGGACgAGa -3'
miRNA:   3'- -CCAGGg--CUCUGGCAGa--GCCCUGgUCg -5'
16230 5' -58.8 NC_004065.1 + 141462 0.73 0.576916
Target:  5'- --cCCCGAGAUCGacgacauccucuUCUaCGuGGACCAGCa -3'
miRNA:   3'- ccaGGGCUCUGGC------------AGA-GC-CCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 142564 0.66 0.895328
Target:  5'- gGGUCCgGAGAUCua-UCGGGAgaCGGUc -3'
miRNA:   3'- -CCAGGgCUCUGGcagAGCCCUg-GUCG- -5'
16230 5' -58.8 NC_004065.1 + 143290 0.66 0.901385
Target:  5'- aGGg-CCGAGGCggCGUCg-GGGGCCGGg -3'
miRNA:   3'- -CCagGGCUCUG--GCAGagCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 146601 0.71 0.672539
Target:  5'- uGGcCaUCGGGGCCGUCggCGGGGCCGuGUc -3'
miRNA:   3'- -CCaG-GGCUCUGGCAGa-GCCCUGGU-CG- -5'
16230 5' -58.8 NC_004065.1 + 149779 0.66 0.900789
Target:  5'- uGGUUUucaacgaCGAGACCGUUUCggagGGGACUaugaAGCu -3'
miRNA:   3'- -CCAGG-------GCUCUGGCAGAG----CCCUGG----UCG- -5'
16230 5' -58.8 NC_004065.1 + 152040 0.75 0.449619
Target:  5'- cGUCCCGGGGCgG-CUCGccgcGGCCAGCg -3'
miRNA:   3'- cCAGGGCUCUGgCaGAGCc---CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 159818 0.67 0.854868
Target:  5'- aGGUCUCGuu-CCGUCUCcGGcAgCAGCa -3'
miRNA:   3'- -CCAGGGCucuGGCAGAGcCC-UgGUCG- -5'
16230 5' -58.8 NC_004065.1 + 165827 0.67 0.889069
Target:  5'- aGUUCCuugaAGACCGUCacuagggacggCGGGGCCGGa -3'
miRNA:   3'- cCAGGGc---UCUGGCAGa----------GCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 165873 0.71 0.672539
Target:  5'- --cUCCGAGACCaggUCGGcGGCCAGCg -3'
miRNA:   3'- ccaGGGCUCUGGcagAGCC-CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 166938 0.67 0.854868
Target:  5'- aGGUCCaacGcCCGUCgcucgcCGGcGACCGGCg -3'
miRNA:   3'- -CCAGGgcuCuGGCAGa-----GCC-CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 168009 0.68 0.816259
Target:  5'- --cUCCGucGACgCGUCUCGGG-CCGGUu -3'
miRNA:   3'- ccaGGGCu-CUG-GCAGAGCCCuGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 174450 0.71 0.691533
Target:  5'- uGUCCgacggCGGGACCGUCUacuacgucgaccCGGGGCaCGGUa -3'
miRNA:   3'- cCAGG-----GCUCUGGCAGA------------GCCCUG-GUCG- -5'
16230 5' -58.8 NC_004065.1 + 180023 0.66 0.918323
Target:  5'- uGUCCCG-GACuCGUCUCGc-ACCGuGCg -3'
miRNA:   3'- cCAGGGCuCUG-GCAGAGCccUGGU-CG- -5'
16230 5' -58.8 NC_004065.1 + 180854 0.67 0.854137
Target:  5'- --aCCCGAGAUCGUCccuuaccaggacaUCGGGGa-GGCu -3'
miRNA:   3'- ccaGGGCUCUGGCAG-------------AGCCCUggUCG- -5'
16230 5' -58.8 NC_004065.1 + 184909 0.68 0.847478
Target:  5'- cGGgcgCCCGGG-UgG-CUCGGGAgCGGCc -3'
miRNA:   3'- -CCa--GGGCUCuGgCaGAGCCCUgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.