miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16230 5' -58.8 NC_004065.1 + 188610 0.69 0.765171
Target:  5'- cGGUCCgucaCGGGACCGUgUCgccGGcGGCgAGCa -3'
miRNA:   3'- -CCAGG----GCUCUGGCAgAG---CC-CUGgUCG- -5'
16230 5' -58.8 NC_004065.1 + 191968 0.66 0.91233
Target:  5'- uGUCCgGcGGCaCGUUggacgggUCGuGGGCCAGCa -3'
miRNA:   3'- cCAGGgCuCUG-GCAG-------AGC-CCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 192089 0.68 0.847478
Target:  5'- cGGgaugUUCGAGACgCGa---GGGACCAGCa -3'
miRNA:   3'- -CCa---GGGCUCUG-GCagagCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 193075 0.75 0.466932
Target:  5'- uGGUCUCGAGACaCGgaUCGGGACCuGg -3'
miRNA:   3'- -CCAGGGCUCUG-GCagAGCCCUGGuCg -5'
16230 5' -58.8 NC_004065.1 + 194776 0.66 0.907238
Target:  5'- cGUCCCGAGACCGggucgCgcaGGGcgaucguCgAGCc -3'
miRNA:   3'- cCAGGGCUCUGGCa----Gag-CCCu------GgUCG- -5'
16230 5' -58.8 NC_004065.1 + 195175 0.66 0.901385
Target:  5'- cGGaUCUCG-GAgCGUCUcugCGGGAUCAGg -3'
miRNA:   3'- -CC-AGGGCuCUgGCAGA---GCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 197539 0.69 0.782694
Target:  5'- ---aCCGAGAUCGUCaaGGGACacuGGCg -3'
miRNA:   3'- ccagGGCUCUGGCAGagCCCUGg--UCG- -5'
16230 5' -58.8 NC_004065.1 + 202156 0.68 0.832188
Target:  5'- aGGUCCCG--GCCGUCcaUCucGACCAGUu -3'
miRNA:   3'- -CCAGGGCucUGGCAG--AGccCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 203098 0.67 0.882611
Target:  5'- cGGUCUCuuGAG-CCuUCuUCGGGGuCCGGCg -3'
miRNA:   3'- -CCAGGG--CUCuGGcAG-AGCCCU-GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 203163 0.69 0.782694
Target:  5'- --aCCCGAgGACCGUCUCucGAcuuCCAGCu -3'
miRNA:   3'- ccaGGGCU-CUGGCAGAGccCU---GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 204193 0.69 0.765171
Target:  5'- cGGUaCUCGAGACCG--UCGGGAugauagUCGGCc -3'
miRNA:   3'- -CCA-GGGCUCUGGCagAGCCCU------GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 205520 0.75 0.432666
Target:  5'- -aUCuuGGGGCCGgcgCUCaGGGCCGGCg -3'
miRNA:   3'- ccAGggCUCUGGCa--GAGcCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 207767 0.67 0.869113
Target:  5'- gGGUUCCGguuucucgucgGGACCaUgUUGGGcGCCGGCa -3'
miRNA:   3'- -CCAGGGC-----------UCUGGcAgAGCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 207994 0.73 0.567446
Target:  5'- cGGccugCCCGGGGCCGUggcCGGGuuaguGCCGGCg -3'
miRNA:   3'- -CCa---GGGCUCUGGCAga-GCCC-----UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 210908 0.71 0.662995
Target:  5'- -cUUCCG-GACCGUCUCGuGGCCGGa -3'
miRNA:   3'- ccAGGGCuCUGGCAGAGCcCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 220404 0.67 0.869113
Target:  5'- cGGUCgaCGAGAUUuuccaaUCUCuGGGAUCAGCu -3'
miRNA:   3'- -CCAGg-GCUCUGGc-----AGAG-CCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 221205 0.7 0.719679
Target:  5'- cGagCCGAGACCGUUgguugUGGuGAUCGGCg -3'
miRNA:   3'- cCagGGCUCUGGCAGa----GCC-CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 223481 1.14 0.001524
Target:  5'- cGGUCCCGAGACCGUCUCGGGACCAGCa -3'
miRNA:   3'- -CCAGGGCUCUGGCAGAGCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 223710 0.68 0.839916
Target:  5'- --aCCgCGAuucgcuaGCCGUCUCagccuGGGACCGGCg -3'
miRNA:   3'- ccaGG-GCUc------UGGCAGAG-----CCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 229617 0.66 0.912885
Target:  5'- --cCCCGGGcgcggaaaaacACCGUCUCGuGcgccaucccGGCCGGCg -3'
miRNA:   3'- ccaGGGCUC-----------UGGCAGAGC-C---------CUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.