miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16230 5' -58.8 NC_004065.1 + 128738 0.68 0.847478
Target:  5'- uGGcCCCGAGgcaGCCGUCggcagCGGcAgCGGCa -3'
miRNA:   3'- -CCaGGGCUC---UGGCAGa----GCCcUgGUCG- -5'
16230 5' -58.8 NC_004065.1 + 127601 0.68 0.832188
Target:  5'- --gCCU---ACCGcugCUCGGGACCGGCg -3'
miRNA:   3'- ccaGGGcucUGGCa--GAGCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 119450 0.71 0.653429
Target:  5'- uGGUCgCCGAGACCGacgcCUgGcGGACCgccgaAGCg -3'
miRNA:   3'- -CCAG-GGCUCUGGCa---GAgC-CCUGG-----UCG- -5'
16230 5' -58.8 NC_004065.1 + 118158 0.67 0.862082
Target:  5'- uGUCaCCGAGACCG-CggCGGcGGCCgucacGGCu -3'
miRNA:   3'- cCAG-GGCUCUGGCaGa-GCC-CUGG-----UCG- -5'
16230 5' -58.8 NC_004065.1 + 116143 0.73 0.558017
Target:  5'- cGUCCUGcGGCgG-CUCGGGGCCGGg -3'
miRNA:   3'- cCAGGGCuCUGgCaGAGCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 115904 0.77 0.339356
Target:  5'- cGG-CUCGGGGCCGUCgUCGGccucGGCCGGCa -3'
miRNA:   3'- -CCaGGGCUCUGGCAG-AGCC----CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 114891 0.73 0.567446
Target:  5'- cGGUUCCGAGGCCaucaUCUCGGuGGCUccgggggguggGGCg -3'
miRNA:   3'- -CCAGGGCUCUGGc---AGAGCC-CUGG-----------UCG- -5'
16230 5' -58.8 NC_004065.1 + 113884 0.66 0.895328
Target:  5'- cGGcCCCGAG-CCGcCgcaGGacgccGACCAGCu -3'
miRNA:   3'- -CCaGGGCUCuGGCaGag-CC-----CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 110571 0.66 0.907238
Target:  5'- cGGUCCgCcAGGCgucgGUCUCGGcGACCAccacGCg -3'
miRNA:   3'- -CCAGG-GcUCUGg---CAGAGCC-CUGGU----CG- -5'
16230 5' -58.8 NC_004065.1 + 109885 0.66 0.918323
Target:  5'- cGUCgCCGcGGCCGcgUCGGGGggucCCGGCu -3'
miRNA:   3'- cCAG-GGCuCUGGCagAGCCCU----GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 104183 0.67 0.868418
Target:  5'- cGGUgCCGGauacGACCGUCagcaagaUCGuGAUCAGCg -3'
miRNA:   3'- -CCAgGGCU----CUGGCAG-------AGCcCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 101288 0.7 0.738127
Target:  5'- -cUgCCGAcGGCUGcCUCGGcGGCCAGCc -3'
miRNA:   3'- ccAgGGCU-CUGGCaGAGCC-CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 98684 0.69 0.781829
Target:  5'- cGUCCCGAucgacggGAcCCGUCaUgGGGAcgcCCAGCu -3'
miRNA:   3'- cCAGGGCU-------CU-GGCAG-AgCCCU---GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 98243 0.71 0.691533
Target:  5'- gGGUgCCGAcGACgG-CUCGGGACggCGGCc -3'
miRNA:   3'- -CCAgGGCU-CUGgCaGAGCCCUG--GUCG- -5'
16230 5' -58.8 NC_004065.1 + 96307 0.66 0.895328
Target:  5'- cGUCCacacGGAcuCCGUCUCGGGGuCCAaggGCu -3'
miRNA:   3'- cCAGGgc--UCU--GGCAGAGCCCU-GGU---CG- -5'
16230 5' -58.8 NC_004065.1 + 95181 0.7 0.72894
Target:  5'- gGGUCCaGGGcCCGUCUCcGGGGgaGGCc -3'
miRNA:   3'- -CCAGGgCUCuGGCAGAG-CCCUggUCG- -5'
16230 5' -58.8 NC_004065.1 + 94228 0.67 0.875957
Target:  5'- uGGUCCCGAcGCCaUUUUGGuGGCCuccGCc -3'
miRNA:   3'- -CCAGGGCUcUGGcAGAGCC-CUGGu--CG- -5'
16230 5' -58.8 NC_004065.1 + 93443 0.67 0.875957
Target:  5'- cGGaUCCCcGGACCG-Ca--GGACCAGCu -3'
miRNA:   3'- -CC-AGGGcUCUGGCaGagcCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 91836 0.67 0.887152
Target:  5'- cGGUcgCCCGuGGCCGUuguuguuguugaucCUCGccACCAGCg -3'
miRNA:   3'- -CCA--GGGCuCUGGCA--------------GAGCccUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 84082 0.68 0.816259
Target:  5'- cGGaUCCUGccGACCGUCagGGcGGCCAGg -3'
miRNA:   3'- -CC-AGGGCu-CUGGCAGagCC-CUGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.