miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16230 5' -58.8 NC_004065.1 + 36949 0.67 0.854868
Target:  5'- aGGUCCCGAu-CCGugUCUCGaGACCAu- -3'
miRNA:   3'- -CCAGGGCUcuGGC--AGAGCcCUGGUcg -5'
16230 5' -58.8 NC_004065.1 + 168009 0.68 0.816259
Target:  5'- --cUCCGucGACgCGUCUCGGG-CCGGUu -3'
miRNA:   3'- ccaGGGCu-CUG-GCAGAGCCCuGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 202156 0.68 0.832188
Target:  5'- aGGUCCCG--GCCGUCcaUCucGACCAGUu -3'
miRNA:   3'- -CCAGGGCucUGGCAG--AGccCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 127601 0.68 0.832188
Target:  5'- --gCCU---ACCGcugCUCGGGACCGGCg -3'
miRNA:   3'- ccaGGGcucUGGCa--GAGCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 50282 0.68 0.832188
Target:  5'- gGGcCCCGAGACCGcCguccgcgCGGcGAUC-GCg -3'
miRNA:   3'- -CCaGGGCUCUGGCaGa------GCC-CUGGuCG- -5'
16230 5' -58.8 NC_004065.1 + 26898 0.68 0.839916
Target:  5'- cGGUCCaGAGGCCG-CUCGaccgcacgccGGACCccgaagaaGGCu -3'
miRNA:   3'- -CCAGGgCUCUGGCaGAGC----------CCUGG--------UCG- -5'
16230 5' -58.8 NC_004065.1 + 223710 0.68 0.839916
Target:  5'- --aCCgCGAuucgcuaGCCGUCUCagccuGGGACCGGCg -3'
miRNA:   3'- ccaGG-GCUc------UGGCAGAG-----CCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 128738 0.68 0.847478
Target:  5'- uGGcCCCGAGgcaGCCGUCggcagCGGcAgCGGCa -3'
miRNA:   3'- -CCaGGGCUC---UGGCAGa----GCCcUgGUCG- -5'
16230 5' -58.8 NC_004065.1 + 184909 0.68 0.847478
Target:  5'- cGGgcgCCCGGG-UgG-CUCGGGAgCGGCc -3'
miRNA:   3'- -CCa--GGGCUCuGgCaGAGCCCUgGUCG- -5'
16230 5' -58.8 NC_004065.1 + 133068 0.68 0.816259
Target:  5'- cGGUUCCcucggcGAG-CUGgacCUCGGGAUCGGCc -3'
miRNA:   3'- -CCAGGG------CUCuGGCa--GAGCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 203163 0.69 0.782694
Target:  5'- --aCCCGAgGACCGUCUCucGAcuuCCAGCu -3'
miRNA:   3'- ccaGGGCU-CUGGCAGAGccCU---GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 204193 0.69 0.765171
Target:  5'- cGGUaCUCGAGACCG--UCGGGAugauagUCGGCc -3'
miRNA:   3'- -CCA-GGGCUCUGGCagAGCCCU------GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 23138 0.73 0.548632
Target:  5'- cGGUCCCGGGAgaaucccacucaCCGgcgaCUCGuaACCAGCg -3'
miRNA:   3'- -CCAGGGCUCU------------GGCa---GAGCccUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 116143 0.73 0.558017
Target:  5'- cGUCCUGcGGCgG-CUCGGGGCCGGg -3'
miRNA:   3'- cCAGGGCuCUGgCaGAGCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 119450 0.71 0.653429
Target:  5'- uGGUCgCCGAGACCGacgcCUgGcGGACCgccgaAGCg -3'
miRNA:   3'- -CCAG-GGCUCUGGCa---GAgC-CCUGG-----UCG- -5'
16230 5' -58.8 NC_004065.1 + 22222 0.71 0.662995
Target:  5'- cGGUCgCGAuGACCGUCaUCGu-GCCGGCg -3'
miRNA:   3'- -CCAGgGCU-CUGGCAG-AGCccUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 98243 0.71 0.691533
Target:  5'- gGGUgCCGAcGACgG-CUCGGGACggCGGCc -3'
miRNA:   3'- -CCAgGGCU-CUGgCaGAGCCCUG--GUCG- -5'
16230 5' -58.8 NC_004065.1 + 130867 0.7 0.700968
Target:  5'- --aCUgGAGACCaGcCUCGGGcGCCGGCg -3'
miRNA:   3'- ccaGGgCUCUGG-CaGAGCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 221205 0.7 0.719679
Target:  5'- cGagCCGAGACCGUUgguugUGGuGAUCGGCg -3'
miRNA:   3'- cCagGGCUCUGGCAGa----GCC-CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 188610 0.69 0.765171
Target:  5'- cGGUCCgucaCGGGACCGUgUCgccGGcGGCgAGCa -3'
miRNA:   3'- -CCAGG----GCUCUGGCAgAG---CC-CUGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.