Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16230 | 5' | -58.8 | NC_004065.1 | + | 84082 | 0.68 | 0.816259 |
Target: 5'- cGGaUCCUGccGACCGUCagGGcGGCCAGg -3' miRNA: 3'- -CC-AGGGCu-CUGGCAGagCC-CUGGUCg -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 210908 | 0.71 | 0.662995 |
Target: 5'- -cUUCCG-GACCGUCUCGuGGCCGGa -3' miRNA: 3'- ccAGGGCuCUGGCAGAGCcCUGGUCg -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 141462 | 0.73 | 0.576916 |
Target: 5'- --cCCCGAGAUCGacgacauccucuUCUaCGuGGACCAGCa -3' miRNA: 3'- ccaGGGCUCUGGC------------AGA-GC-CCUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 207994 | 0.73 | 0.567446 |
Target: 5'- cGGccugCCCGGGGCCGUggcCGGGuuaguGCCGGCg -3' miRNA: 3'- -CCa---GGGCUCUGGCAga-GCCC-----UGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 114891 | 0.73 | 0.567446 |
Target: 5'- cGGUUCCGAGGCCaucaUCUCGGuGGCUccgggggguggGGCg -3' miRNA: 3'- -CCAGGGCUCUGGc---AGAGCC-CUGG-----------UCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 193075 | 0.75 | 0.466932 |
Target: 5'- uGGUCUCGAGACaCGgaUCGGGACCuGg -3' miRNA: 3'- -CCAGGGCUCUG-GCagAGCCCUGGuCg -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 152040 | 0.75 | 0.449619 |
Target: 5'- cGUCCCGGGGCgG-CUCGccgcGGCCAGCg -3' miRNA: 3'- cCAGGGCUCUGgCaGAGCc---CUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 205520 | 0.75 | 0.432666 |
Target: 5'- -aUCuuGGGGCCGgcgCUCaGGGCCGGCg -3' miRNA: 3'- ccAGggCUCUGGCa--GAGcCCUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 115904 | 0.77 | 0.339356 |
Target: 5'- cGG-CUCGGGGCCGUCgUCGGccucGGCCGGCa -3' miRNA: 3'- -CCaGGGCUCUGGCAG-AGCC----CUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 139476 | 0.71 | 0.672539 |
Target: 5'- aGGUUCgagGGGGCCGUCgggCGGGACgAGa -3' miRNA: 3'- -CCAGGg--CUCUGGCAGa--GCCCUGgUCg -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 146601 | 0.71 | 0.672539 |
Target: 5'- uGGcCaUCGGGGCCGUCggCGGGGCCGuGUc -3' miRNA: 3'- -CCaG-GGCUCUGGCAGa-GCCCUGGU-CG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 43545 | 0.69 | 0.798902 |
Target: 5'- cGUCCCGcuccGGAUCGUagUCGGGACUccagacgGGCc -3' miRNA: 3'- cCAGGGC----UCUGGCAg-AGCCCUGG-------UCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 197539 | 0.69 | 0.782694 |
Target: 5'- ---aCCGAGAUCGUCaaGGGACacuGGCg -3' miRNA: 3'- ccagGGCUCUGGCAGagCCCUGg--UCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 98684 | 0.69 | 0.781829 |
Target: 5'- cGUCCCGAucgacggGAcCCGUCaUgGGGAcgcCCAGCu -3' miRNA: 3'- cCAGGGCU-------CU-GGCAG-AgCCCU---GGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 131783 | 0.69 | 0.765171 |
Target: 5'- cGUCCCGAG-CCGUCgUCGGcACCcuCg -3' miRNA: 3'- cCAGGGCUCuGGCAG-AGCCcUGGucG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 101288 | 0.7 | 0.738127 |
Target: 5'- -cUgCCGAcGGCUGcCUCGGcGGCCAGCc -3' miRNA: 3'- ccAgGGCU-CUGGCaGAGCC-CUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 95181 | 0.7 | 0.72894 |
Target: 5'- gGGUCCaGGGcCCGUCUCcGGGGgaGGCc -3' miRNA: 3'- -CCAGGgCUCuGGCAGAG-CCCUggUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 174450 | 0.71 | 0.691533 |
Target: 5'- uGUCCgacggCGGGACCGUCUacuacgucgaccCGGGGCaCGGUa -3' miRNA: 3'- cCAGG-----GCUCUGGCAGA------------GCCCUG-GUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 165873 | 0.71 | 0.672539 |
Target: 5'- --cUCCGAGACCaggUCGGcGGCCAGCg -3' miRNA: 3'- ccaGGGCUCUGGcagAGCC-CUGGUCG- -5' |
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16230 | 5' | -58.8 | NC_004065.1 | + | 6545 | 1.02 | 0.009173 |
Target: 5'- uGGUCCCGAGACgGUCUCGGGACCGGUg -3' miRNA: 3'- -CCAGGGCUCUGgCAGAGCCCUGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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