miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16230 5' -58.8 NC_004065.1 + 180023 0.66 0.918323
Target:  5'- uGUCCCG-GACuCGUCUCGc-ACCGuGCg -3'
miRNA:   3'- cCAGGGCuCUG-GCAGAGCccUGGU-CG- -5'
16230 5' -58.8 NC_004065.1 + 203163 0.69 0.782694
Target:  5'- --aCCCGAgGACCGUCUCucGAcuuCCAGCu -3'
miRNA:   3'- ccaGGGCU-CUGGCAGAGccCU---GGUCG- -5'
16230 5' -58.8 NC_004065.1 + 116143 0.73 0.558017
Target:  5'- cGUCCUGcGGCgG-CUCGGGGCCGGg -3'
miRNA:   3'- cCAGGGCuCUGgCaGAGCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 165827 0.67 0.889069
Target:  5'- aGUUCCuugaAGACCGUCacuagggacggCGGGGCCGGa -3'
miRNA:   3'- cCAGGGc---UCUGGCAGa----------GCCCUGGUCg -5'
16230 5' -58.8 NC_004065.1 + 98243 0.71 0.691533
Target:  5'- gGGUgCCGAcGACgG-CUCGGGACggCGGCc -3'
miRNA:   3'- -CCAgGGCU-CUGgCaGAGCCCUG--GUCG- -5'
16230 5' -58.8 NC_004065.1 + 130867 0.7 0.700968
Target:  5'- --aCUgGAGACCaGcCUCGGGcGCCGGCg -3'
miRNA:   3'- ccaGGgCUCUGG-CaGAGCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 133068 0.68 0.816259
Target:  5'- cGGUUCCcucggcGAG-CUGgacCUCGGGAUCGGCc -3'
miRNA:   3'- -CCAGGG------CUCuGGCa--GAGCCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 168009 0.68 0.816259
Target:  5'- --cUCCGucGACgCGUCUCGGG-CCGGUu -3'
miRNA:   3'- ccaGGGCu-CUG-GCAGAGCCCuGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 202156 0.68 0.832188
Target:  5'- aGGUCCCG--GCCGUCcaUCucGACCAGUu -3'
miRNA:   3'- -CCAGGGCucUGGCAG--AGccCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 93443 0.67 0.875957
Target:  5'- cGGaUCCCcGGACCG-Ca--GGACCAGCu -3'
miRNA:   3'- -CC-AGGGcUCUGGCaGagcCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 94228 0.67 0.875957
Target:  5'- uGGUCCCGAcGCCaUUUUGGuGGCCuccGCc -3'
miRNA:   3'- -CCAGGGCUcUGGcAGAGCC-CUGGu--CG- -5'
16230 5' -58.8 NC_004065.1 + 220404 0.67 0.869113
Target:  5'- cGGUCgaCGAGAUUuuccaaUCUCuGGGAUCAGCu -3'
miRNA:   3'- -CCAGg-GCUCUGGc-----AGAG-CCCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 50580 0.67 0.869113
Target:  5'- -aUCCuCGAGcacccuACUGUCuUCGGGcGCCGGCc -3'
miRNA:   3'- ccAGG-GCUC------UGGCAG-AGCCC-UGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 104183 0.67 0.868418
Target:  5'- cGGUgCCGGauacGACCGUCagcaagaUCGuGAUCAGCg -3'
miRNA:   3'- -CCAgGGCU----CUGGCAG-------AGCcCUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 18165 0.67 0.859937
Target:  5'- cGUCCgCGGGGCguUCUCGGGACgaaucugagcuggaCGGCu -3'
miRNA:   3'- cCAGG-GCUCUGgcAGAGCCCUG--------------GUCG- -5'
16230 5' -58.8 NC_004065.1 + 118158 0.67 0.862082
Target:  5'- uGUCaCCGAGACCG-CggCGGcGGCCgucacGGCu -3'
miRNA:   3'- cCAG-GGCUCUGGCaGa-GCC-CUGG-----UCG- -5'
16230 5' -58.8 NC_004065.1 + 166938 0.67 0.854868
Target:  5'- aGGUCCaacGcCCGUCgcucgcCGGcGACCGGCg -3'
miRNA:   3'- -CCAGGgcuCuGGCAGa-----GCC-CUGGUCG- -5'
16230 5' -58.8 NC_004065.1 + 36949 0.67 0.854868
Target:  5'- aGGUCCCGAu-CCGugUCUCGaGACCAu- -3'
miRNA:   3'- -CCAGGGCUcuGGC--AGAGCcCUGGUcg -5'
16230 5' -58.8 NC_004065.1 + 184909 0.68 0.847478
Target:  5'- cGGgcgCCCGGG-UgG-CUCGGGAgCGGCc -3'
miRNA:   3'- -CCa--GGGCUCuGgCaGAGCCCUgGUCG- -5'
16230 5' -58.8 NC_004065.1 + 127601 0.68 0.832188
Target:  5'- --gCCU---ACCGcugCUCGGGACCGGCg -3'
miRNA:   3'- ccaGGGcucUGGCa--GAGCCCUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.