miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16231 3' -57.3 NC_004065.1 + 123759 0.65 0.941955
Target:  5'- gCGCCagcacccuggucgaGUACGACGagguggacGGACUgACCUCCAucauGCa -3'
miRNA:   3'- -GCGG--------------CGUGCUGU--------CCUGA-UGGAGGU----CG- -5'
16231 3' -57.3 NC_004065.1 + 182713 0.66 0.940622
Target:  5'- cCGCCGCggaucggccucacggGCGACgccGGGGCcACCgacacgUCGGCg -3'
miRNA:   3'- -GCGGCG---------------UGCUG---UCCUGaUGGa-----GGUCG- -5'
16231 3' -57.3 NC_004065.1 + 131464 0.66 0.938813
Target:  5'- uCGCCGgaUACGACgAGGACgaUGCCgcgaCgGGCg -3'
miRNA:   3'- -GCGGC--GUGCUG-UCCUG--AUGGa---GgUCG- -5'
16231 3' -57.3 NC_004065.1 + 33772 0.66 0.938813
Target:  5'- gGCUGUGuCGcCGGGACcGCUUUCGGCc -3'
miRNA:   3'- gCGGCGU-GCuGUCCUGaUGGAGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 44390 0.66 0.938813
Target:  5'- aGCUGCAguaccacuCGACGGGA-UACaagaUCCAGUc -3'
miRNA:   3'- gCGGCGU--------GCUGUCCUgAUGg---AGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 204551 0.66 0.938813
Target:  5'- uCGUCGgGCGGCGGGAggugcugcgcguCUGCuCUCUGGg -3'
miRNA:   3'- -GCGGCgUGCUGUCCU------------GAUG-GAGGUCg -5'
16231 3' -57.3 NC_004065.1 + 102741 0.66 0.938813
Target:  5'- aGCCGgAUcgaGACAGGACagagACg-CCGGCg -3'
miRNA:   3'- gCGGCgUG---CUGUCCUGa---UGgaGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 121234 0.66 0.938813
Target:  5'- gGCCGcCACGcCAGGuucgacgccGCcACCUCUAGg -3'
miRNA:   3'- gCGGC-GUGCuGUCC---------UGaUGGAGGUCg -5'
16231 3' -57.3 NC_004065.1 + 166151 0.66 0.938813
Target:  5'- gCGCCG-GCGGCAGcGGCgccgACgUCguGCa -3'
miRNA:   3'- -GCGGCgUGCUGUC-CUGa---UGgAGguCG- -5'
16231 3' -57.3 NC_004065.1 + 59332 0.66 0.938813
Target:  5'- gCGCCGCG-GGCGGcGuGCgAUUUCCAGCu -3'
miRNA:   3'- -GCGGCGUgCUGUC-C-UGaUGGAGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 145941 0.66 0.938813
Target:  5'- gGCCGCccugacgguCGGCAGGAUccgaGCCaUCGGCu -3'
miRNA:   3'- gCGGCGu--------GCUGUCCUGa---UGGaGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 61052 0.66 0.938813
Target:  5'- cCGCCGCGCuGAC-GGAC-ACCgagaGGCc -3'
miRNA:   3'- -GCGGCGUG-CUGuCCUGaUGGagg-UCG- -5'
16231 3' -57.3 NC_004065.1 + 64541 0.66 0.938813
Target:  5'- uGCgGCGCGACGGcGAC-ACa--CAGCu -3'
miRNA:   3'- gCGgCGUGCUGUC-CUGaUGgagGUCG- -5'
16231 3' -57.3 NC_004065.1 + 128099 0.66 0.937433
Target:  5'- gCGUCG-AC-ACAGGGCgaaaucgagcauccuCCUCCAGCa -3'
miRNA:   3'- -GCGGCgUGcUGUCCUGau-------------GGAGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 187394 0.66 0.937433
Target:  5'- uGgCGCGCGGCgcgguguggcgucgAGGGCgagcgcACC-CCAGCg -3'
miRNA:   3'- gCgGCGUGCUG--------------UCCUGa-----UGGaGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 199584 0.66 0.934138
Target:  5'- aCGCCGCuuCGGCAGGuCaGCUUggUCAGUc -3'
miRNA:   3'- -GCGGCGu-GCUGUCCuGaUGGA--GGUCG- -5'
16231 3' -57.3 NC_004065.1 + 156893 0.66 0.934138
Target:  5'- gGUCGCGCGuCGGGGuccCgauCCUCCgccGGCa -3'
miRNA:   3'- gCGGCGUGCuGUCCU---Gau-GGAGG---UCG- -5'
16231 3' -57.3 NC_004065.1 + 126263 0.66 0.934138
Target:  5'- uGCUGCGCGACGGucCggagGCCccgCCGcGCg -3'
miRNA:   3'- gCGGCGUGCUGUCcuGa---UGGa--GGU-CG- -5'
16231 3' -57.3 NC_004065.1 + 99668 0.66 0.934138
Target:  5'- gGCgGCGCGGCGccGACaGCgUCCGGUg -3'
miRNA:   3'- gCGgCGUGCUGUc-CUGaUGgAGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 157341 0.66 0.934138
Target:  5'- gGUCGCuCGGCAGGu---UCUCCAGg -3'
miRNA:   3'- gCGGCGuGCUGUCCugauGGAGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.