miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16231 3' -57.3 NC_004065.1 + 490 0.67 0.913801
Target:  5'- gGCCGCGCGccgcguccGCGGGAaggcggggugaggcGCCccgCCAGCg -3'
miRNA:   3'- gCGGCGUGC--------UGUCCUga------------UGGa--GGUCG- -5'
16231 3' -57.3 NC_004065.1 + 4095 0.69 0.822265
Target:  5'- cCGCCGCgggagACGACGGGAagcgGCaa-CAGCa -3'
miRNA:   3'- -GCGGCG-----UGCUGUCCUga--UGgagGUCG- -5'
16231 3' -57.3 NC_004065.1 + 4659 0.67 0.901471
Target:  5'- cCGCCGCggGCGucCAGaGACagaggaCUCCGGCg -3'
miRNA:   3'- -GCGGCG--UGCu-GUC-CUGaug---GAGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 6118 0.67 0.897774
Target:  5'- uGCCGCugGucucggccuucgcgaGC-GGACUACaucucgaUCCGGCc -3'
miRNA:   3'- gCGGCGugC---------------UGuCCUGAUGg------AGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 6199 0.67 0.895266
Target:  5'- uCGCuCGCGuccucCGACAGGGucguguucuauCUGCCgcaCCGGCu -3'
miRNA:   3'- -GCG-GCGU-----GCUGUCCU-----------GAUGGa--GGUCG- -5'
16231 3' -57.3 NC_004065.1 + 12948 0.66 0.918791
Target:  5'- gGCCaGCGUGACGGcGGCUggaaACUUUCGGCa -3'
miRNA:   3'- gCGG-CGUGCUGUC-CUGA----UGGAGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 16857 0.71 0.714571
Target:  5'- gCGCaCGCACGGCgAGGGCgaGCCagaaCAGCa -3'
miRNA:   3'- -GCG-GCGUGCUG-UCCUGa-UGGag--GUCG- -5'
16231 3' -57.3 NC_004065.1 + 18137 0.69 0.796979
Target:  5'- cCGCCGCGgGACGGGAUguuggcggUAUCgUCC-GCg -3'
miRNA:   3'- -GCGGCGUgCUGUCCUG--------AUGG-AGGuCG- -5'
16231 3' -57.3 NC_004065.1 + 19173 0.79 0.300442
Target:  5'- uGCCGCuuucugccgaGGCGGGAC-ACCUCCGGCc -3'
miRNA:   3'- gCGGCGug--------CUGUCCUGaUGGAGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 19283 0.72 0.675907
Target:  5'- -cUCGCGCGACGGGGgauCUggACCgUCCGGCg -3'
miRNA:   3'- gcGGCGUGCUGUCCU---GA--UGG-AGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 20686 0.68 0.838338
Target:  5'- aCGCCGCugGcACcGGGCaguCC-CCAGUa -3'
miRNA:   3'- -GCGGCGugC-UGuCCUGau-GGaGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 21965 0.69 0.796979
Target:  5'- gGCCGUcguCGGCAGGACggugaggGCCgccaCGGCc -3'
miRNA:   3'- gCGGCGu--GCUGUCCUGa------UGGag--GUCG- -5'
16231 3' -57.3 NC_004065.1 + 26415 0.69 0.796979
Target:  5'- -uCCGcCACGGCGGcGGCgGCCUCCgagAGCa -3'
miRNA:   3'- gcGGC-GUGCUGUC-CUGaUGGAGG---UCG- -5'
16231 3' -57.3 NC_004065.1 + 27778 0.7 0.742917
Target:  5'- gCGCCGC-CGuCuGGAggGCCUCCuGCc -3'
miRNA:   3'- -GCGGCGuGCuGuCCUgaUGGAGGuCG- -5'
16231 3' -57.3 NC_004065.1 + 27931 0.66 0.918246
Target:  5'- gCGCCGC-CGACAGaGACgcagugcgcacagUugUUCCgcAGCa -3'
miRNA:   3'- -GCGGCGuGCUGUC-CUG-------------AugGAGG--UCG- -5'
16231 3' -57.3 NC_004065.1 + 28834 0.67 0.901471
Target:  5'- gCGCCGCcCGAgcCGGGACgcGCCgcuuggugUCGGCg -3'
miRNA:   3'- -GCGGCGuGCU--GUCCUGa-UGGa-------GGUCG- -5'
16231 3' -57.3 NC_004065.1 + 28873 0.68 0.85372
Target:  5'- uGCUGCGUGACgAGGACUGCUggcgccccgagUCGGCg -3'
miRNA:   3'- gCGGCGUGCUG-UCCUGAUGGa----------GGUCG- -5'
16231 3' -57.3 NC_004065.1 + 28970 0.67 0.901471
Target:  5'- gGgCGCuACGACAcGGAUcagUCUCCGGCg -3'
miRNA:   3'- gCgGCG-UGCUGU-CCUGau-GGAGGUCG- -5'
16231 3' -57.3 NC_004065.1 + 29255 0.67 0.895266
Target:  5'- cCGCCGCGCGACGaGAgaGCgaCCGacGCg -3'
miRNA:   3'- -GCGGCGUGCUGUcCUgaUGgaGGU--CG- -5'
16231 3' -57.3 NC_004065.1 + 29705 0.68 0.87815
Target:  5'- uCGCCGguCGAgcggcggacgccgccCAGGACgaugagauCCUCCGGa -3'
miRNA:   3'- -GCGGCguGCU---------------GUCCUGau------GGAGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.