miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16231 5' -52 NC_004065.1 + 79485 0.66 0.99762
Target:  5'- --cGUAG-ACugGAUCgUGUCGGuGGg -3'
miRNA:   3'- gucUAUCuUGugCUGGgACAGCCuCC- -5'
16231 5' -52 NC_004065.1 + 106685 0.66 0.99762
Target:  5'- -----cGAACAaGACCCUGUucaagacggUGGAGGa -3'
miRNA:   3'- gucuauCUUGUgCUGGGACA---------GCCUCC- -5'
16231 5' -52 NC_004065.1 + 78400 0.66 0.997196
Target:  5'- gUAGA-AGAAgACGACgacgugcagcaUgUGUCGGAGGa -3'
miRNA:   3'- -GUCUaUCUUgUGCUG-----------GgACAGCCUCC- -5'
16231 5' -52 NC_004065.1 + 49971 0.66 0.997196
Target:  5'- gCAGGUAGAGgAgGAgccCCCUGcagaugaGGAGGa -3'
miRNA:   3'- -GUCUAUCUUgUgCU---GGGACag-----CCUCC- -5'
16231 5' -52 NC_004065.1 + 135735 0.66 0.996962
Target:  5'- -uGGUGGAgcuguugcugcuuucGCGCGACgCCUGgcucgugaacggcacCGGAGGg -3'
miRNA:   3'- guCUAUCU---------------UGUGCUG-GGACa--------------GCCUCC- -5'
16231 5' -52 NC_004065.1 + 110772 0.66 0.996711
Target:  5'- aCAuAUAGGcGCGCGGCCCguuUCGGAGc -3'
miRNA:   3'- -GUcUAUCU-UGUGCUGGGac-AGCCUCc -5'
16231 5' -52 NC_004065.1 + 187286 0.66 0.996159
Target:  5'- aAGAgAGAGCggccgccgcgcuGCGAUCaCUGgggCGGAGGa -3'
miRNA:   3'- gUCUaUCUUG------------UGCUGG-GACa--GCCUCC- -5'
16231 5' -52 NC_004065.1 + 173641 0.66 0.996159
Target:  5'- -uGAUcGGAGCGCuccGACCCUGcCGGAc- -3'
miRNA:   3'- guCUA-UCUUGUG---CUGGGACaGCCUcc -5'
16231 5' -52 NC_004065.1 + 159712 0.66 0.996159
Target:  5'- -cGAUAGAACgACGACCa---CGGAGa -3'
miRNA:   3'- guCUAUCUUG-UGCUGGgacaGCCUCc -5'
16231 5' -52 NC_004065.1 + 121257 0.66 0.995793
Target:  5'- aCGGAggagAGGACGCGAuacuCCCUGggcuugaagacccgCGuGAGGg -3'
miRNA:   3'- -GUCUa---UCUUGUGCU----GGGACa-------------GC-CUCC- -5'
16231 5' -52 NC_004065.1 + 165997 0.66 0.995793
Target:  5'- gUAGAUGGuacACAUGcgucucuccugaucuACCCUGUCGGuGa -3'
miRNA:   3'- -GUCUAUCu--UGUGC---------------UGGGACAGCCuCc -5'
16231 5' -52 NC_004065.1 + 114064 0.66 0.995533
Target:  5'- cCAGAUGGAcgccgACaACGugCC-GUCGGAccaGGa -3'
miRNA:   3'- -GUCUAUCU-----UG-UGCugGGaCAGCCU---CC- -5'
16231 5' -52 NC_004065.1 + 70989 0.67 0.994826
Target:  5'- cCAcAUGGGucgcCGCGACCCgagGUCucuGGAGGg -3'
miRNA:   3'- -GUcUAUCUu---GUGCUGGGa--CAG---CCUCC- -5'
16231 5' -52 NC_004065.1 + 212928 0.67 0.994826
Target:  5'- aGGGUGGugauCGugucACCCUcGUCGGAGGu -3'
miRNA:   3'- gUCUAUCuuguGC----UGGGA-CAGCCUCC- -5'
16231 5' -52 NC_004065.1 + 120363 0.67 0.993142
Target:  5'- ----gAGAGCGCccggagGACCCUGcCGGAGu -3'
miRNA:   3'- gucuaUCUUGUG------CUGGGACaGCCUCc -5'
16231 5' -52 NC_004065.1 + 207854 0.67 0.993142
Target:  5'- aAGAUc-GugACGACCCUGUgGGAa- -3'
miRNA:   3'- gUCUAucUugUGCUGGGACAgCCUcc -5'
16231 5' -52 NC_004065.1 + 46502 0.67 0.993142
Target:  5'- aAGAUGucGCGCGAgccguucgagaCCCUGUCGGucGu -3'
miRNA:   3'- gUCUAUcuUGUGCU-----------GGGACAGCCucC- -5'
16231 5' -52 NC_004065.1 + 93203 0.67 0.993142
Target:  5'- aCAGAgac-ACACG-CCaCUGUCGGGGa -3'
miRNA:   3'- -GUCUaucuUGUGCuGG-GACAGCCUCc -5'
16231 5' -52 NC_004065.1 + 35744 0.67 0.993142
Target:  5'- cCAGAUcgcgguugcAGGACGgcgUGGCCCUGUCGaacgugagcGAGGc -3'
miRNA:   3'- -GUCUA---------UCUUGU---GCUGGGACAGC---------CUCC- -5'
16231 5' -52 NC_004065.1 + 59838 0.67 0.992149
Target:  5'- -cGAUGGGGCuCGAUCUUGaCGGAGc -3'
miRNA:   3'- guCUAUCUUGuGCUGGGACaGCCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.