miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16231 5' -52 NC_004065.1 + 19731 0.7 0.95588
Target:  5'- gAGAUGGGGCGCGuauCCCaGgaagaCGGGGGc -3'
miRNA:   3'- gUCUAUCUUGUGCu--GGGaCa----GCCUCC- -5'
16231 5' -52 NC_004065.1 + 30480 0.71 0.947856
Target:  5'- -cGAUGGGGCGCG-CCCgGcUGGAGGc -3'
miRNA:   3'- guCUAUCUUGUGCuGGGaCaGCCUCC- -5'
16231 5' -52 NC_004065.1 + 35744 0.67 0.993142
Target:  5'- cCAGAUcgcgguugcAGGACGgcgUGGCCCUGUCGaacgugagcGAGGc -3'
miRNA:   3'- -GUCUA---------UCUUGU---GCUGGGACAGC---------CUCC- -5'
16231 5' -52 NC_004065.1 + 37668 0.67 0.991045
Target:  5'- aGGAUGGAAUACG-CCCUcGUgaCaGAGGa -3'
miRNA:   3'- gUCUAUCUUGUGCuGGGA-CA--GcCUCC- -5'
16231 5' -52 NC_004065.1 + 46502 0.67 0.993142
Target:  5'- aAGAUGucGCGCGAgccguucgagaCCCUGUCGGucGu -3'
miRNA:   3'- gUCUAUcuUGUGCU-----------GGGACAGCCucC- -5'
16231 5' -52 NC_004065.1 + 49971 0.66 0.997196
Target:  5'- gCAGGUAGAGgAgGAgccCCCUGcagaugaGGAGGa -3'
miRNA:   3'- -GUCUAUCUUgUgCU---GGGACag-----CCUCC- -5'
16231 5' -52 NC_004065.1 + 51491 0.76 0.745123
Target:  5'- aCAGAugUAGAACAUGAcucCCCUGUCGuAGGc -3'
miRNA:   3'- -GUCU--AUCUUGUGCU---GGGACAGCcUCC- -5'
16231 5' -52 NC_004065.1 + 52841 0.69 0.981645
Target:  5'- aGGggAGAGCcgACGAUCCUGUCGacGAGa -3'
miRNA:   3'- gUCuaUCUUG--UGCUGGGACAGC--CUCc -5'
16231 5' -52 NC_004065.1 + 59838 0.67 0.992149
Target:  5'- -cGAUGGGGCuCGAUCUUGaCGGAGc -3'
miRNA:   3'- guCUAUCUUGuGCUGGGACaGCCUCc -5'
16231 5' -52 NC_004065.1 + 69621 0.74 0.858416
Target:  5'- gCAGGUGGAAUACGACCgcaaGaUGGAGGa -3'
miRNA:   3'- -GUCUAUCUUGUGCUGGga--CaGCCUCC- -5'
16231 5' -52 NC_004065.1 + 70989 0.67 0.994826
Target:  5'- cCAcAUGGGucgcCGCGACCCgagGUCucuGGAGGg -3'
miRNA:   3'- -GUcUAUCUu---GUGCUGGGa--CAG---CCUCC- -5'
16231 5' -52 NC_004065.1 + 78400 0.66 0.997196
Target:  5'- gUAGA-AGAAgACGACgacgugcagcaUgUGUCGGAGGa -3'
miRNA:   3'- -GUCUaUCUUgUGCUG-----------GgACAGCCUCC- -5'
16231 5' -52 NC_004065.1 + 79485 0.66 0.99762
Target:  5'- --cGUAG-ACugGAUCgUGUCGGuGGg -3'
miRNA:   3'- gucUAUCuUGugCUGGgACAGCCuCC- -5'
16231 5' -52 NC_004065.1 + 81274 0.69 0.979541
Target:  5'- uGGAcgccGAGgACG-CCCUGUCGGAGc -3'
miRNA:   3'- gUCUau--CUUgUGCuGGGACAGCCUCc -5'
16231 5' -52 NC_004065.1 + 81582 0.69 0.979541
Target:  5'- cCAGA-AGAcCuuGACCgUGUUGGAGGu -3'
miRNA:   3'- -GUCUaUCUuGugCUGGgACAGCCUCC- -5'
16231 5' -52 NC_004065.1 + 92747 0.68 0.986988
Target:  5'- aAGAUcgccaAGAGCACGGCCCUGuUCGc--- -3'
miRNA:   3'- gUCUA-----UCUUGUGCUGGGAC-AGCcucc -5'
16231 5' -52 NC_004065.1 + 93203 0.67 0.993142
Target:  5'- aCAGAgac-ACACG-CCaCUGUCGGGGa -3'
miRNA:   3'- -GUCUaucuUGUGCuGG-GACAGCCUCc -5'
16231 5' -52 NC_004065.1 + 104275 0.7 0.959559
Target:  5'- -cGAUAcacGACGCcgGGCCCUGUCuGGAGGc -3'
miRNA:   3'- guCUAUc--UUGUG--CUGGGACAG-CCUCC- -5'
16231 5' -52 NC_004065.1 + 106685 0.66 0.99762
Target:  5'- -----cGAACAaGACCCUGUucaagacggUGGAGGa -3'
miRNA:   3'- gucuauCUUGUgCUGGGACA---------GCCUCC- -5'
16231 5' -52 NC_004065.1 + 107170 0.69 0.981645
Target:  5'- gCAGGUGGGGCugGACgCgGUCGucaAGGa -3'
miRNA:   3'- -GUCUAUCUUGugCUGgGaCAGCc--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.