miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16231 5' -52 NC_004065.1 + 223814 1.11 0.008849
Target:  5'- gCAGAUAGAACACGACCCUGUCGGAGGa -3'
miRNA:   3'- -GUCUAUCUUGUGCUGGGACAGCCUCC- -5'
16231 5' -52 NC_004065.1 + 135735 0.66 0.996962
Target:  5'- -uGGUGGAgcuguugcugcuuucGCGCGACgCCUGgcucgugaacggcacCGGAGGg -3'
miRNA:   3'- guCUAUCU---------------UGUGCUG-GGACa--------------GCCUCC- -5'
16231 5' -52 NC_004065.1 + 110772 0.66 0.996711
Target:  5'- aCAuAUAGGcGCGCGGCCCguuUCGGAGc -3'
miRNA:   3'- -GUcUAUCU-UGUGCUGGGac-AGCCUCc -5'
16231 5' -52 NC_004065.1 + 159712 0.66 0.996159
Target:  5'- -cGAUAGAACgACGACCa---CGGAGa -3'
miRNA:   3'- guCUAUCUUG-UGCUGGgacaGCCUCc -5'
16231 5' -52 NC_004065.1 + 165997 0.66 0.995793
Target:  5'- gUAGAUGGuacACAUGcgucucuccugaucuACCCUGUCGGuGa -3'
miRNA:   3'- -GUCUAUCu--UGUGC---------------UGGGACAGCCuCc -5'
16231 5' -52 NC_004065.1 + 212928 0.67 0.994826
Target:  5'- aGGGUGGugauCGugucACCCUcGUCGGAGGu -3'
miRNA:   3'- gUCUAUCuuguGC----UGGGA-CAGCCUCC- -5'
16231 5' -52 NC_004065.1 + 46502 0.67 0.993142
Target:  5'- aAGAUGucGCGCGAgccguucgagaCCCUGUCGGucGu -3'
miRNA:   3'- gUCUAUcuUGUGCU-----------GGGACAGCCucC- -5'
16231 5' -52 NC_004065.1 + 59838 0.67 0.992149
Target:  5'- -cGAUGGGGCuCGAUCUUGaCGGAGc -3'
miRNA:   3'- guCUAUCUUGuGCUGGGACaGCCUCc -5'
16231 5' -52 NC_004065.1 + 177126 0.68 0.989822
Target:  5'- aAGA-AGAAgAUGAUCCUGg-GGAGGa -3'
miRNA:   3'- gUCUaUCUUgUGCUGGGACagCCUCC- -5'
16231 5' -52 NC_004065.1 + 52841 0.69 0.981645
Target:  5'- aGGggAGAGCcgACGAUCCUGUCGacGAGa -3'
miRNA:   3'- gUCuaUCUUG--UGCUGGGACAGC--CUCc -5'
16231 5' -52 NC_004065.1 + 51491 0.76 0.745123
Target:  5'- aCAGAugUAGAACAUGAcucCCCUGUCGuAGGc -3'
miRNA:   3'- -GUCU--AUCUUGUGCU---GGGACAGCcUCC- -5'
16231 5' -52 NC_004065.1 + 69621 0.74 0.858416
Target:  5'- gCAGGUGGAAUACGACCgcaaGaUGGAGGa -3'
miRNA:   3'- -GUCUAUCUUGUGCUGGga--CaGCCUCC- -5'
16231 5' -52 NC_004065.1 + 138289 0.71 0.934106
Target:  5'- aCAGGUAcagggaggccguGGACGCGGCCCUGaUCGcgugcGAGGc -3'
miRNA:   3'- -GUCUAU------------CUUGUGCUGGGAC-AGC-----CUCC- -5'
16231 5' -52 NC_004065.1 + 166291 0.71 0.947856
Target:  5'- aCGGcgGGGAaGCGAuCCCUGUaacugCGGAGGa -3'
miRNA:   3'- -GUCuaUCUUgUGCU-GGGACA-----GCCUCC- -5'
16231 5' -52 NC_004065.1 + 19731 0.7 0.95588
Target:  5'- gAGAUGGGGCGCGuauCCCaGgaagaCGGGGGc -3'
miRNA:   3'- gUCUAUCUUGUGCu--GGGaCa----GCCUCC- -5'
16231 5' -52 NC_004065.1 + 81582 0.69 0.979541
Target:  5'- cCAGA-AGAcCuuGACCgUGUUGGAGGu -3'
miRNA:   3'- -GUCUaUCUuGugCUGGgACAGCCUCC- -5'
16231 5' -52 NC_004065.1 + 106685 0.66 0.99762
Target:  5'- -----cGAACAaGACCCUGUucaagacggUGGAGGa -3'
miRNA:   3'- gucuauCUUGUgCUGGGACA---------GCCUCC- -5'
16231 5' -52 NC_004065.1 + 202950 0.71 0.943055
Target:  5'- gGGAgAGGACGCGACacagucgCCUGUacgggCGGAGGu -3'
miRNA:   3'- gUCUaUCUUGUGCUG-------GGACA-----GCCUCC- -5'
16231 5' -52 NC_004065.1 + 30480 0.71 0.947856
Target:  5'- -cGAUGGGGCGCG-CCCgGcUGGAGGc -3'
miRNA:   3'- guCUAUCUUGUGCuGGGaCaGCCUCC- -5'
16231 5' -52 NC_004065.1 + 104275 0.7 0.959559
Target:  5'- -cGAUAcacGACGCcgGGCCCUGUCuGGAGGc -3'
miRNA:   3'- guCUAUc--UUGUG--CUGGGACAG-CCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.