Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16231 | 5' | -52 | NC_004065.1 | + | 114064 | 0.66 | 0.995533 |
Target: 5'- cCAGAUGGAcgccgACaACGugCC-GUCGGAccaGGa -3' miRNA: 3'- -GUCUAUCU-----UG-UGCugGGaCAGCCU---CC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 121257 | 0.66 | 0.995793 |
Target: 5'- aCGGAggagAGGACGCGAuacuCCCUGggcuugaagacccgCGuGAGGg -3' miRNA: 3'- -GUCUa---UCUUGUGCU----GGGACa-------------GC-CUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 173641 | 0.66 | 0.996159 |
Target: 5'- -uGAUcGGAGCGCuccGACCCUGcCGGAc- -3' miRNA: 3'- guCUA-UCUUGUG---CUGGGACaGCCUcc -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 187286 | 0.66 | 0.996159 |
Target: 5'- aAGAgAGAGCggccgccgcgcuGCGAUCaCUGgggCGGAGGa -3' miRNA: 3'- gUCUaUCUUG------------UGCUGG-GACa--GCCUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 49971 | 0.66 | 0.997196 |
Target: 5'- gCAGGUAGAGgAgGAgccCCCUGcagaugaGGAGGa -3' miRNA: 3'- -GUCUAUCUUgUgCU---GGGACag-----CCUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 78400 | 0.66 | 0.997196 |
Target: 5'- gUAGA-AGAAgACGACgacgugcagcaUgUGUCGGAGGa -3' miRNA: 3'- -GUCUaUCUUgUGCUG-----------GgACAGCCUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 79485 | 0.66 | 0.99762 |
Target: 5'- --cGUAG-ACugGAUCgUGUCGGuGGg -3' miRNA: 3'- gucUAUCuUGugCUGGgACAGCCuCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 93203 | 0.67 | 0.993142 |
Target: 5'- aCAGAgac-ACACG-CCaCUGUCGGGGa -3' miRNA: 3'- -GUCUaucuUGUGCuGG-GACAGCCUCc -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 143251 | 0.67 | 0.991045 |
Target: 5'- gGGGUGGGAgAUgGACCCgcggCGGGGGc -3' miRNA: 3'- gUCUAUCUUgUG-CUGGGaca-GCCUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 37668 | 0.67 | 0.991045 |
Target: 5'- aGGAUGGAAUACG-CCCUcGUgaCaGAGGa -3' miRNA: 3'- gUCUAUCUUGUGCuGGGA-CA--GcCUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 202950 | 0.71 | 0.943055 |
Target: 5'- gGGAgAGGACGCGACacagucgCCUGUacgggCGGAGGu -3' miRNA: 3'- gUCUaUCUUGUGCUG-------GGACA-----GCCUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 30480 | 0.71 | 0.947856 |
Target: 5'- -cGAUGGGGCGCG-CCCgGcUGGAGGc -3' miRNA: 3'- guCUAUCUUGUGCuGGGaCaGCCUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 104275 | 0.7 | 0.959559 |
Target: 5'- -cGAUAcacGACGCcgGGCCCUGUCuGGAGGc -3' miRNA: 3'- guCUAUc--UUGUG--CUGGGACAG-CCUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 130493 | 0.7 | 0.963021 |
Target: 5'- gAGAcgGGAGCGcCGACCagCUGaCGGAGGu -3' miRNA: 3'- gUCUa-UCUUGU-GCUGG--GACaGCCUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 198497 | 0.7 | 0.963021 |
Target: 5'- cCAGGUAcAGCGCGACCUg--CGuGAGGg -3' miRNA: 3'- -GUCUAUcUUGUGCUGGGacaGC-CUCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 81274 | 0.69 | 0.979541 |
Target: 5'- uGGAcgccGAGgACG-CCCUGUCGGAGc -3' miRNA: 3'- gUCUau--CUUgUGCuGGGACAGCCUCc -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 107170 | 0.69 | 0.981645 |
Target: 5'- gCAGGUGGGGCugGACgCgGUCGucaAGGa -3' miRNA: 3'- -GUCUAUCUUGugCUGgGaCAGCc--UCC- -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 92747 | 0.68 | 0.986988 |
Target: 5'- aAGAUcgccaAGAGCACGGCCCUGuUCGc--- -3' miRNA: 3'- gUCUA-----UCUUGUGCUGGGAC-AGCcucc -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 145332 | 0.68 | 0.988472 |
Target: 5'- gAGAgggAGGACAUGACCaucggGUgGGAGa -3' miRNA: 3'- gUCUa--UCUUGUGCUGGga---CAgCCUCc -5' |
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16231 | 5' | -52 | NC_004065.1 | + | 206310 | 0.68 | 0.988472 |
Target: 5'- cCGGAcGGAcCGCGACugCUUGUCGGGcGGg -3' miRNA: 3'- -GUCUaUCUuGUGCUG--GGACAGCCU-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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