miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16232 3' -56.9 NC_004065.1 + 4219 0.72 0.61854
Target:  5'- -aGGACcaGGCCUGGG-CCGCGGGGAc -3'
miRNA:   3'- ucUUUGaaCCGGGCCCuGGCGCCUUU- -5'
16232 3' -56.9 NC_004065.1 + 29584 0.66 0.933304
Target:  5'- --uGACggcGGCCgCGGuGACCGCGGu-- -3'
miRNA:   3'- ucuUUGaa-CCGG-GCC-CUGGCGCCuuu -5'
16232 3' -56.9 NC_004065.1 + 40899 0.66 0.928281
Target:  5'- --uAugUUGGUCCGGG-CCaCGGGGAg -3'
miRNA:   3'- ucuUugAACCGGGCCCuGGcGCCUUU- -5'
16232 3' -56.9 NC_004065.1 + 66127 0.7 0.746469
Target:  5'- cGAGGCgcUGGCgCGcuGGGCCGCGGAc- -3'
miRNA:   3'- uCUUUGa-ACCGgGC--CCUGGCGCCUuu -5'
16232 3' -56.9 NC_004065.1 + 67503 0.75 0.491781
Target:  5'- cGAGACcUGGCCCGGcGGCUcguGCGGAu- -3'
miRNA:   3'- uCUUUGaACCGGGCC-CUGG---CGCCUuu -5'
16232 3' -56.9 NC_004065.1 + 74825 0.66 0.911843
Target:  5'- uGGAGACgcccGGgUCGGGACCGaGGGGc -3'
miRNA:   3'- -UCUUUGaa--CCgGGCCCUGGCgCCUUu -5'
16232 3' -56.9 NC_004065.1 + 83206 0.69 0.801185
Target:  5'- gGGAAAUUcgGGCCCGGGcaggcacauCCGCaGGAc- -3'
miRNA:   3'- -UCUUUGAa-CCGGGCCCu--------GGCG-CCUuu -5'
16232 3' -56.9 NC_004065.1 + 98249 0.66 0.90591
Target:  5'- --cGACgacGGCUCGGGACgGCGGc-- -3'
miRNA:   3'- ucuUUGaa-CCGGGCCCUGgCGCCuuu -5'
16232 3' -56.9 NC_004065.1 + 99857 0.67 0.899753
Target:  5'- cAGA----UGGCgCCGGGGUCGCGGAu- -3'
miRNA:   3'- -UCUuugaACCG-GGCCCUGGCGCCUuu -5'
16232 3' -56.9 NC_004065.1 + 107796 0.66 0.933304
Target:  5'- cGGAuACUUGGCCgUGGGcgaGCGGGc- -3'
miRNA:   3'- -UCUuUGAACCGG-GCCCuggCGCCUuu -5'
16232 3' -56.9 NC_004065.1 + 111535 0.67 0.872945
Target:  5'- cGguACUcGGCCCGGGACgGCa---- -3'
miRNA:   3'- uCuuUGAaCCGGGCCCUGgCGccuuu -5'
16232 3' -56.9 NC_004065.1 + 116422 0.66 0.90591
Target:  5'- ----cCUUGGC--GGGACCGCGGGc- -3'
miRNA:   3'- ucuuuGAACCGggCCCUGGCGCCUuu -5'
16232 3' -56.9 NC_004065.1 + 119585 0.67 0.884757
Target:  5'- uGAAACggcUGGCCUGGacgugcaggacgccGGCgGCGGAGGa -3'
miRNA:   3'- uCUUUGa--ACCGGGCC--------------CUGgCGCCUUU- -5'
16232 3' -56.9 NC_004065.1 + 121602 0.66 0.932812
Target:  5'- gAGGAAUUUGGUCUcguaGGGGCCGaaaucuacagucaCGGGGAc -3'
miRNA:   3'- -UCUUUGAACCGGG----CCCUGGC-------------GCCUUU- -5'
16232 3' -56.9 NC_004065.1 + 127204 0.67 0.899125
Target:  5'- cGGGGACgUGGUUCGGGagcggcgGCCGCGaGGAu -3'
miRNA:   3'- -UCUUUGaACCGGGCCC-------UGGCGC-CUUu -5'
16232 3' -56.9 NC_004065.1 + 136412 0.67 0.893375
Target:  5'- gGGGAGCUgguccugggGGCCCGGuGAgCCgaggucgguagGCGGGAAg -3'
miRNA:   3'- -UCUUUGAa--------CCGGGCC-CU-GG-----------CGCCUUU- -5'
16232 3' -56.9 NC_004065.1 + 136505 0.7 0.755878
Target:  5'- gGGGAGC-UGGUCCGGGaaGCCagGCGGGu- -3'
miRNA:   3'- -UCUUUGaACCGGGCCC--UGG--CGCCUuu -5'
16232 3' -56.9 NC_004065.1 + 137539 0.74 0.500229
Target:  5'- cGGGACUuccggucagccucUGGCCCGGcacaucGCCGCGGAAGg -3'
miRNA:   3'- uCUUUGA-------------ACCGGGCCc-----UGGCGCCUUU- -5'
16232 3' -56.9 NC_004065.1 + 139006 0.68 0.842851
Target:  5'- cGGGACggUGGCCauGGACCGCGucaaGAAGa -3'
miRNA:   3'- uCUUUGa-ACCGGgcCCUGGCGC----CUUU- -5'
16232 3' -56.9 NC_004065.1 + 156865 0.66 0.923029
Target:  5'- gAGGGAC-UGGUCgGGGACCGaauccUGGGGu -3'
miRNA:   3'- -UCUUUGaACCGGgCCCUGGC-----GCCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.