miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16232 5' -45.7 NC_004065.1 + 121990 0.66 0.999999
Target:  5'- uUUUUCCuCGCgguguugUCGAAGGUCGGgaggUCg -3'
miRNA:   3'- uGAAAGGuGUG-------AGUUUCCAGUCaa--AG- -5'
16232 5' -45.7 NC_004065.1 + 123708 0.66 0.999997
Target:  5'- cCUUgUCCgucuuGCGCcCGAAGGUCAGgaUCg -3'
miRNA:   3'- uGAA-AGG-----UGUGaGUUUCCAGUCaaAG- -5'
16232 5' -45.7 NC_004065.1 + 193932 0.66 0.999997
Target:  5'- cCUgagUCGCGCggacCAGAGGUggCAGUUUCa -3'
miRNA:   3'- uGAaa-GGUGUGa---GUUUCCA--GUCAAAG- -5'
16232 5' -45.7 NC_004065.1 + 191648 0.67 0.999995
Target:  5'- ----gCCGCACUCGuAGGUCAccUUCc -3'
miRNA:   3'- ugaaaGGUGUGAGUuUCCAGUcaAAG- -5'
16232 5' -45.7 NC_004065.1 + 33230 0.67 0.999995
Target:  5'- ---gUCCGCAgaCGAGGGUCuGgugUUCg -3'
miRNA:   3'- ugaaAGGUGUgaGUUUCCAGuCa--AAG- -5'
16232 5' -45.7 NC_004065.1 + 208050 0.67 0.999995
Target:  5'- -----gCACGCUCAgaucGAGGUCGGUg-- -3'
miRNA:   3'- ugaaagGUGUGAGU----UUCCAGUCAaag -5'
16232 5' -45.7 NC_004065.1 + 21704 0.67 0.999985
Target:  5'- cGCcgUCCGgACaaUCGAAGGUCaggaaGGUUUCg -3'
miRNA:   3'- -UGaaAGGUgUG--AGUUUCCAG-----UCAAAG- -5'
16232 5' -45.7 NC_004065.1 + 187721 0.68 0.999972
Target:  5'- gGCUgcgCCuGCGgUacGAGGUCAGUUUCa -3'
miRNA:   3'- -UGAaa-GG-UGUgAguUUCCAGUCAAAG- -5'
16232 5' -45.7 NC_004065.1 + 129964 0.69 0.999847
Target:  5'- gGCgc-UCACGCgagCGAGGGUCAGgcUCu -3'
miRNA:   3'- -UGaaaGGUGUGa--GUUUCCAGUCaaAG- -5'
16232 5' -45.7 NC_004065.1 + 60077 0.69 0.999847
Target:  5'- cGCgggCCGCGCUCGucgucgucgaaGAGGUCGGggUa -3'
miRNA:   3'- -UGaaaGGUGUGAGU-----------UUCCAGUCaaAg -5'
16232 5' -45.7 NC_004065.1 + 182315 0.7 0.999747
Target:  5'- ----gCCACGCUCGAGGGgaugcgCAGcgUCa -3'
miRNA:   3'- ugaaaGGUGUGAGUUUCCa-----GUCaaAG- -5'
16232 5' -45.7 NC_004065.1 + 3136 0.7 0.999491
Target:  5'- gACUUUCCGCGgUCccGGGcCAaGUUUCu -3'
miRNA:   3'- -UGAAAGGUGUgAGuuUCCaGU-CAAAG- -5'
16232 5' -45.7 NC_004065.1 + 22064 0.71 0.998562
Target:  5'- gGCggcUCCcgaGCACUUGGAGGUUAGUUUUc -3'
miRNA:   3'- -UGaa-AGG---UGUGAGUUUCCAGUCAAAG- -5'
16232 5' -45.7 NC_004065.1 + 185060 0.73 0.99432
Target:  5'- aACgggUCGCugUCGAAGGUCGGUg-- -3'
miRNA:   3'- -UGaaaGGUGugAGUUUCCAGUCAaag -5'
16232 5' -45.7 NC_004065.1 + 226918 1.12 0.02699
Target:  5'- aACUUUCCACACUCAAAGGUCAGUUUCg -3'
miRNA:   3'- -UGAAAGGUGUGAGUUUCCAGUCAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.