miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16233 5' -48.9 NC_004065.1 + 111800 0.66 0.99978
Target:  5'- cGACgGCUCCGaugacCGC-CGGUcUUUGUGCg -3'
miRNA:   3'- -CUGgCGAGGU-----GUGaGUCGaAAAUAUG- -5'
16233 5' -48.9 NC_004065.1 + 42640 0.66 0.99978
Target:  5'- cACCGCgCCGCGCgcCAGCUg----GCa -3'
miRNA:   3'- cUGGCGaGGUGUGa-GUCGAaaauaUG- -5'
16233 5' -48.9 NC_004065.1 + 109853 0.66 0.999775
Target:  5'- -gUCGCUCCccucacccaggugGCACUCGGaa-UUGUGCg -3'
miRNA:   3'- cuGGCGAGG-------------UGUGAGUCgaaAAUAUG- -5'
16233 5' -48.9 NC_004065.1 + 225631 0.66 0.999721
Target:  5'- cACCGCUCCgaacaGCACUcCGGCUc------ -3'
miRNA:   3'- cUGGCGAGG-----UGUGA-GUCGAaaauaug -5'
16233 5' -48.9 NC_004065.1 + 204018 0.66 0.999721
Target:  5'- cGCCGaggCCACGgUCAGCgacgugcUGUACg -3'
miRNA:   3'- cUGGCga-GGUGUgAGUCGaaa----AUAUG- -5'
16233 5' -48.9 NC_004065.1 + 139405 0.66 0.999647
Target:  5'- cGACgGC-CCGCGCgCAGCgagaGUGCg -3'
miRNA:   3'- -CUGgCGaGGUGUGaGUCGaaaaUAUG- -5'
16233 5' -48.9 NC_004065.1 + 97871 0.66 0.999639
Target:  5'- cGCCGCcaccacgUCCAgGCUCGGCgcgUUGUu- -3'
miRNA:   3'- cUGGCG-------AGGUgUGAGUCGaa-AAUAug -5'
16233 5' -48.9 NC_004065.1 + 193282 0.66 0.999558
Target:  5'- cGCCGUccUCCACGCUC-GCg--UAUAa -3'
miRNA:   3'- cUGGCG--AGGUGUGAGuCGaaaAUAUg -5'
16233 5' -48.9 NC_004065.1 + 1874 0.66 0.999449
Target:  5'- uGCCGUUCCACGgaguCUCGGCa------- -3'
miRNA:   3'- cUGGCGAGGUGU----GAGUCGaaaauaug -5'
16233 5' -48.9 NC_004065.1 + 98173 0.67 0.999318
Target:  5'- cGCCGC-CUAgGCUCAGCgug-GUAUu -3'
miRNA:   3'- cUGGCGaGGUgUGAGUCGaaaaUAUG- -5'
16233 5' -48.9 NC_004065.1 + 162194 0.67 0.998973
Target:  5'- cGACCGCUCgACACg-AGCUa------ -3'
miRNA:   3'- -CUGGCGAGgUGUGagUCGAaaauaug -5'
16233 5' -48.9 NC_004065.1 + 225671 0.67 0.998973
Target:  5'- --gCGCUCCACGCgCAGCcgUUUGg-- -3'
miRNA:   3'- cugGCGAGGUGUGaGUCGa-AAAUaug -5'
16233 5' -48.9 NC_004065.1 + 110707 0.67 0.99849
Target:  5'- aGCCGCcgCCGCgACUCGGCcgaguaUUUUAUGg -3'
miRNA:   3'- cUGGCGa-GGUG-UGAGUCG------AAAAUAUg -5'
16233 5' -48.9 NC_004065.1 + 131679 0.68 0.997826
Target:  5'- cGACCGggUCguaACUCAGCUUgauggUGUGCg -3'
miRNA:   3'- -CUGGCgaGGug-UGAGUCGAAa----AUAUG- -5'
16233 5' -48.9 NC_004065.1 + 102388 0.68 0.997411
Target:  5'- gGACCGCgagaACACUCAGCgccucgUcgACg -3'
miRNA:   3'- -CUGGCGagg-UGUGAGUCGaaa---AuaUG- -5'
16233 5' -48.9 NC_004065.1 + 165457 0.68 0.996933
Target:  5'- cGACgCGCUCCcCGCggCGGCUcagAUACu -3'
miRNA:   3'- -CUG-GCGAGGuGUGa-GUCGAaaaUAUG- -5'
16233 5' -48.9 NC_004065.1 + 37776 0.68 0.996933
Target:  5'- uACCGCUaCCgacugGCACUCAGCgccagccaGUACa -3'
miRNA:   3'- cUGGCGA-GG-----UGUGAGUCGaaaa----UAUG- -5'
16233 5' -48.9 NC_004065.1 + 12646 0.69 0.994235
Target:  5'- aGGCCGCUCCuaucccCGCUCcucGCUg--AUGCu -3'
miRNA:   3'- -CUGGCGAGGu-----GUGAGu--CGAaaaUAUG- -5'
16233 5' -48.9 NC_004065.1 + 150492 0.69 0.993324
Target:  5'- cGACCGCcuucUCC-CGCUCGGCc---GUGCg -3'
miRNA:   3'- -CUGGCG----AGGuGUGAGUCGaaaaUAUG- -5'
16233 5' -48.9 NC_004065.1 + 16558 0.69 0.992301
Target:  5'- cGACCGCUCCgacuACAcCUCAGCccgagacUACg -3'
miRNA:   3'- -CUGGCGAGG----UGU-GAGUCGaaaau--AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.