#
miRNA: 3'- -CUGGCGAGGUGUGAG---UCGaaaauaug -5'
miRNA: 3'- -CUGgCGaGGUgUGAGUCGAaaAUAUG- -5'
miRNA: 3'- cuGGCGAGgUGUGAGuCGAAAAU---AUG- -5'
miRNA: 3'- cUGGCGAGG-UGUGAG-----UCGAaaa---UAUG- -5'
miRNA: 3'- -CUGGCGAGGUGUGAGUCGAAAAUAUG- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
|
P value |
| Predicted miRNA align pattern | |||||||
| 16233 | 5' | -48.9 | NC_004065.1 | + | 164575 | 0.7 | 0.988472 |
|
Target: 5'- cGACCGCUUCGCGCUCcagAGCc------- -3' miRNA: 3'- -CUGGCGAGGUGUGAG---UCGaaaauaug -5' |
|||||||
| 16233 | 5' | -48.9 | NC_004065.1 | + | 197642 | 0.71 | 0.981244 |
|
Target: 5'- cGGCgGCaCCGgGCUCAGCU--UGUACa -3' miRNA: 3'- -CUGgCGaGGUgUGAGUCGAaaAUAUG- -5' |
|||||||
| 16233 | 5' | -48.9 | NC_004065.1 | + | 94061 | 0.73 | 0.949165 |
|
Target: 5'- -cCCGCUCgACGCUCcGCUUUUGcucUGCc -3' miRNA: 3'- cuGGCGAGgUGUGAGuCGAAAAU---AUG- -5' |
|||||||
| 16233 | 5' | -48.9 | NC_004065.1 | + | 76174 | 0.73 | 0.949165 |
|
Target: 5'- uGCCGCUCCuACACUCccaauAGCUgaggagAUACu -3' miRNA: 3'- cUGGCGAGG-UGUGAG-----UCGAaaa---UAUG- -5' |
|||||||
| 16233 | 5' | -48.9 | NC_004065.1 | + | 228874 | 1.12 | 0.012282 |
|
Target: 5'- cGACCGCUCCACACUCAGCUUUUAUACa -3' miRNA: 3'- -CUGGCGAGGUGUGAGUCGAAAAUAUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home