Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16233 | 5' | -48.9 | NC_004065.1 | + | 228874 | 1.12 | 0.012282 |
Target: 5'- cGACCGCUCCACACUCAGCUUUUAUACa -3' miRNA: 3'- -CUGGCGAGGUGUGAGUCGAAAAUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 225671 | 0.67 | 0.998973 |
Target: 5'- --gCGCUCCACGCgCAGCcgUUUGg-- -3' miRNA: 3'- cugGCGAGGUGUGaGUCGa-AAAUaug -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 225631 | 0.66 | 0.999721 |
Target: 5'- cACCGCUCCgaacaGCACUcCGGCUc------ -3' miRNA: 3'- cUGGCGAGG-----UGUGA-GUCGAaaauaug -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 204018 | 0.66 | 0.999721 |
Target: 5'- cGCCGaggCCACGgUCAGCgacgugcUGUACg -3' miRNA: 3'- cUGGCga-GGUGUgAGUCGaaa----AUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 197642 | 0.71 | 0.981244 |
Target: 5'- cGGCgGCaCCGgGCUCAGCU--UGUACa -3' miRNA: 3'- -CUGgCGaGGUgUGAGUCGAaaAUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 193282 | 0.66 | 0.999558 |
Target: 5'- cGCCGUccUCCACGCUC-GCg--UAUAa -3' miRNA: 3'- cUGGCG--AGGUGUGAGuCGaaaAUAUg -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 165457 | 0.68 | 0.996933 |
Target: 5'- cGACgCGCUCCcCGCggCGGCUcagAUACu -3' miRNA: 3'- -CUG-GCGAGGuGUGa-GUCGAaaaUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 164575 | 0.7 | 0.988472 |
Target: 5'- cGACCGCUUCGCGCUCcagAGCc------- -3' miRNA: 3'- -CUGGCGAGGUGUGAG---UCGaaaauaug -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 162194 | 0.67 | 0.998973 |
Target: 5'- cGACCGCUCgACACg-AGCUa------ -3' miRNA: 3'- -CUGGCGAGgUGUGagUCGAaaauaug -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 150492 | 0.69 | 0.993324 |
Target: 5'- cGACCGCcuucUCC-CGCUCGGCc---GUGCg -3' miRNA: 3'- -CUGGCG----AGGuGUGAGUCGaaaaUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 139405 | 0.66 | 0.999647 |
Target: 5'- cGACgGC-CCGCGCgCAGCgagaGUGCg -3' miRNA: 3'- -CUGgCGaGGUGUGaGUCGaaaaUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 131679 | 0.68 | 0.997826 |
Target: 5'- cGACCGggUCguaACUCAGCUUgauggUGUGCg -3' miRNA: 3'- -CUGGCgaGGug-UGAGUCGAAa----AUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 111800 | 0.66 | 0.99978 |
Target: 5'- cGACgGCUCCGaugacCGC-CGGUcUUUGUGCg -3' miRNA: 3'- -CUGgCGAGGU-----GUGaGUCGaAAAUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 110707 | 0.67 | 0.99849 |
Target: 5'- aGCCGCcgCCGCgACUCGGCcgaguaUUUUAUGg -3' miRNA: 3'- cUGGCGa-GGUG-UGAGUCG------AAAAUAUg -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 109853 | 0.66 | 0.999775 |
Target: 5'- -gUCGCUCCccucacccaggugGCACUCGGaa-UUGUGCg -3' miRNA: 3'- cuGGCGAGG-------------UGUGAGUCgaaAAUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 102388 | 0.68 | 0.997411 |
Target: 5'- gGACCGCgagaACACUCAGCgccucgUcgACg -3' miRNA: 3'- -CUGGCGagg-UGUGAGUCGaaa---AuaUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 98173 | 0.67 | 0.999318 |
Target: 5'- cGCCGC-CUAgGCUCAGCgug-GUAUu -3' miRNA: 3'- cUGGCGaGGUgUGAGUCGaaaaUAUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 97871 | 0.66 | 0.999639 |
Target: 5'- cGCCGCcaccacgUCCAgGCUCGGCgcgUUGUu- -3' miRNA: 3'- cUGGCG-------AGGUgUGAGUCGaa-AAUAug -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 94061 | 0.73 | 0.949165 |
Target: 5'- -cCCGCUCgACGCUCcGCUUUUGcucUGCc -3' miRNA: 3'- cuGGCGAGgUGUGAGuCGAAAAU---AUG- -5' |
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16233 | 5' | -48.9 | NC_004065.1 | + | 76174 | 0.73 | 0.949165 |
Target: 5'- uGCCGCUCCuACACUCccaauAGCUgaggagAUACu -3' miRNA: 3'- cUGGCGAGG-UGUGAG-----UCGAaaa---UAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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