miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 88837 0.65 0.985113
Target:  5'- cGGCGCGGUcauaguugaugagcACGUucauaGGCGuCACgUCGAAg -3'
miRNA:   3'- -UCGCGCCA--------------UGCA-----CCGUuGUG-AGCUUg -5'
16234 3' -54.1 NC_004065.1 + 213135 0.66 0.984589
Target:  5'- uGCGUGGUcaccguaGUGGCGuuggggcuggagcucAUACUCGAAg -3'
miRNA:   3'- uCGCGCCAug-----CACCGU---------------UGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 58426 0.66 0.98387
Target:  5'- aGGCgauGCGGuUGC-UGGCGGugaACUCGAGCu -3'
miRNA:   3'- -UCG---CGCC-AUGcACCGUUg--UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 96581 0.66 0.98387
Target:  5'- gAGcCGCGacGCGUGGCGACGCUg---- -3'
miRNA:   3'- -UC-GCGCcaUGCACCGUUGUGAgcuug -5'
16234 3' -54.1 NC_004065.1 + 198310 0.66 0.98387
Target:  5'- uGUGCGGggagcucacCGUcaucGGC-ACGCUCGGGCa -3'
miRNA:   3'- uCGCGCCau-------GCA----CCGuUGUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 169384 0.66 0.98387
Target:  5'- uGCGUGGcGCGgGGCAACACggccgUGGu- -3'
miRNA:   3'- uCGCGCCaUGCaCCGUUGUGa----GCUug -5'
16234 3' -54.1 NC_004065.1 + 24211 0.66 0.98387
Target:  5'- aAGaCGCGGUugGcgaGGUuuCGCUCGcGCc -3'
miRNA:   3'- -UC-GCGCCAugCa--CCGuuGUGAGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 106996 0.66 0.98387
Target:  5'- cGCGUGcaucccugacgaGUACGUGGCcgccAAUACcCGGACg -3'
miRNA:   3'- uCGCGC------------CAUGCACCG----UUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 69292 0.66 0.98387
Target:  5'- aGGCGCGcGUACGUgcaGGCggUGa-CGGGCa -3'
miRNA:   3'- -UCGCGC-CAUGCA---CCGuuGUgaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 199006 0.66 0.981959
Target:  5'- gGGcCGCGGc-CGagGGCAA-GCUCGAACa -3'
miRNA:   3'- -UC-GCGCCauGCa-CCGUUgUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 210597 0.66 0.981959
Target:  5'- cAGCGCGGUGCcuccGGCAccuccgccgACGCcggCGggUa -3'
miRNA:   3'- -UCGCGCCAUGca--CCGU---------UGUGa--GCuuG- -5'
16234 3' -54.1 NC_004065.1 + 68944 0.66 0.981959
Target:  5'- cGCGCGGagUACGagacGGCGcgcaaGCAgauCUCGGACg -3'
miRNA:   3'- uCGCGCC--AUGCa---CCGU-----UGU---GAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 209947 0.66 0.981959
Target:  5'- cAGUuaGuGUAUGUGGCccGACgggcgGCUCGAGCg -3'
miRNA:   3'- -UCGcgC-CAUGCACCG--UUG-----UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 222398 0.66 0.979884
Target:  5'- uGCGCGccACGUGGacggguCGACAUUCGAu- -3'
miRNA:   3'- uCGCGCcaUGCACC------GUUGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 110840 0.66 0.979884
Target:  5'- cAGUGCGGgGCGcgGGCcgccCGCgUCGAACc -3'
miRNA:   3'- -UCGCGCCaUGCa-CCGuu--GUG-AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 136619 0.66 0.979884
Target:  5'- gGGCGCuGGUcCGaGGCGGCGgUCcgGAGCg -3'
miRNA:   3'- -UCGCG-CCAuGCaCCGUUGUgAG--CUUG- -5'
16234 3' -54.1 NC_004065.1 + 116763 0.66 0.979884
Target:  5'- cGCGCGG-GCGguuucuGCAcCugUCGGACg -3'
miRNA:   3'- uCGCGCCaUGCac----CGUuGugAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 41495 0.66 0.977635
Target:  5'- gGGCGuCGGgACG-GGgAGCGCgCGGGCg -3'
miRNA:   3'- -UCGC-GCCaUGCaCCgUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 87049 0.66 0.977635
Target:  5'- aAGaCGCGGU-CGUaGGacaccaGACACUCGcGCg -3'
miRNA:   3'- -UC-GCGCCAuGCA-CCg-----UUGUGAGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 97585 0.66 0.977635
Target:  5'- aGGgGCGG-ACG-GcGCAACACgUCGAAg -3'
miRNA:   3'- -UCgCGCCaUGCaC-CGUUGUG-AGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.