Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16234 | 3' | -54.1 | NC_004065.1 | + | 88837 | 0.65 | 0.985113 |
Target: 5'- cGGCGCGGUcauaguugaugagcACGUucauaGGCGuCACgUCGAAg -3' miRNA: 3'- -UCGCGCCA--------------UGCA-----CCGUuGUG-AGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 69292 | 0.66 | 0.98387 |
Target: 5'- aGGCGCGcGUACGUgcaGGCggUGa-CGGGCa -3' miRNA: 3'- -UCGCGC-CAUGCA---CCGuuGUgaGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 96581 | 0.66 | 0.98387 |
Target: 5'- gAGcCGCGacGCGUGGCGACGCUg---- -3' miRNA: 3'- -UC-GCGCcaUGCACCGUUGUGAgcuug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 24211 | 0.66 | 0.98387 |
Target: 5'- aAGaCGCGGUugGcgaGGUuuCGCUCGcGCc -3' miRNA: 3'- -UC-GCGCCAugCa--CCGuuGUGAGCuUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 106996 | 0.66 | 0.98387 |
Target: 5'- cGCGUGcaucccugacgaGUACGUGGCcgccAAUACcCGGACg -3' miRNA: 3'- uCGCGC------------CAUGCACCG----UUGUGaGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 222398 | 0.66 | 0.979884 |
Target: 5'- uGCGCGccACGUGGacggguCGACAUUCGAu- -3' miRNA: 3'- uCGCGCcaUGCACC------GUUGUGAGCUug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 209947 | 0.66 | 0.981959 |
Target: 5'- cAGUuaGuGUAUGUGGCccGACgggcgGCUCGAGCg -3' miRNA: 3'- -UCGcgC-CAUGCACCG--UUG-----UGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 68944 | 0.66 | 0.981959 |
Target: 5'- cGCGCGGagUACGagacGGCGcgcaaGCAgauCUCGGACg -3' miRNA: 3'- uCGCGCC--AUGCa---CCGU-----UGU---GAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 58426 | 0.66 | 0.98387 |
Target: 5'- aGGCgauGCGGuUGC-UGGCGGugaACUCGAGCu -3' miRNA: 3'- -UCG---CGCC-AUGcACCGUUg--UGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 220742 | 0.66 | 0.974443 |
Target: 5'- -uCGCGGUcgGCGUGuGCGacgucugcaucucuGCACUCGcGACg -3' miRNA: 3'- ucGCGCCA--UGCAC-CGU--------------UGUGAGC-UUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 110840 | 0.66 | 0.979884 |
Target: 5'- cAGUGCGGgGCGcgGGCcgccCGCgUCGAACc -3' miRNA: 3'- -UCGCGCCaUGCa-CCGuu--GUG-AGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 97585 | 0.66 | 0.977635 |
Target: 5'- aGGgGCGG-ACG-GcGCAACACgUCGAAg -3' miRNA: 3'- -UCgCGCCaUGCaC-CGUUGUG-AGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 136619 | 0.66 | 0.979884 |
Target: 5'- gGGCGCuGGUcCGaGGCGGCGgUCcgGAGCg -3' miRNA: 3'- -UCGCG-CCAuGCaCCGUUGUgAG--CUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 87049 | 0.66 | 0.977635 |
Target: 5'- aAGaCGCGGU-CGUaGGacaccaGACACUCGcGCg -3' miRNA: 3'- -UC-GCGCCAuGCA-CCg-----UUGUGAGCuUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 213135 | 0.66 | 0.984589 |
Target: 5'- uGCGUGGUcaccguaGUGGCGuuggggcuggagcucAUACUCGAAg -3' miRNA: 3'- uCGCGCCAug-----CACCGU---------------UGUGAGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 68154 | 0.66 | 0.975207 |
Target: 5'- uGGaCGCGGUGauCGcGGCGGCGCgcgCGAc- -3' miRNA: 3'- -UC-GCGCCAU--GCaCCGUUGUGa--GCUug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 173440 | 0.66 | 0.975207 |
Target: 5'- gGGUGaCGuucgacGUACcgGUGGCGGCGCUCGAc- -3' miRNA: 3'- -UCGC-GC------CAUG--CACCGUUGUGAGCUug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 92532 | 0.66 | 0.975207 |
Target: 5'- cGCGCGcGUACGggcgGGCgGGCGCgCGcACg -3' miRNA: 3'- uCGCGC-CAUGCa---CCG-UUGUGaGCuUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 131643 | 0.66 | 0.975207 |
Target: 5'- uGCGCuGG-AUGUGGCGGaGCuggUCGAGCa -3' miRNA: 3'- uCGCG-CCaUGCACCGUUgUG---AGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 41495 | 0.66 | 0.977635 |
Target: 5'- gGGCGuCGGgACG-GGgAGCGCgCGGGCg -3' miRNA: 3'- -UCGC-GCCaUGCaCCgUUGUGaGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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