miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 169384 0.66 0.98387
Target:  5'- uGCGUGGcGCGgGGCAACACggccgUGGu- -3'
miRNA:   3'- uCGCGCCaUGCaCCGUUGUGa----GCUug -5'
16234 3' -54.1 NC_004065.1 + 198310 0.66 0.98387
Target:  5'- uGUGCGGggagcucacCGUcaucGGC-ACGCUCGGGCa -3'
miRNA:   3'- uCGCGCCau-------GCA----CCGuUGUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 136619 0.66 0.979884
Target:  5'- gGGCGCuGGUcCGaGGCGGCGgUCcgGAGCg -3'
miRNA:   3'- -UCGCG-CCAuGCaCCGUUGUgAG--CUUG- -5'
16234 3' -54.1 NC_004065.1 + 210597 0.66 0.981959
Target:  5'- cAGCGCGGUGCcuccGGCAccuccgccgACGCcggCGggUa -3'
miRNA:   3'- -UCGCGCCAUGca--CCGU---------UGUGa--GCuuG- -5'
16234 3' -54.1 NC_004065.1 + 213135 0.66 0.984589
Target:  5'- uGCGUGGUcaccguaGUGGCGuuggggcuggagcucAUACUCGAAg -3'
miRNA:   3'- uCGCGCCAug-----CACCGU---------------UGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 168545 0.67 0.972592
Target:  5'- uAGCgGCGGUG-GUGGCAGCggcggcggcgGCgacagCGGGCg -3'
miRNA:   3'- -UCG-CGCCAUgCACCGUUG----------UGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 48638 0.67 0.960136
Target:  5'- gGGCGCGaccagcgACGUGGCGAagaugggaUCGAGCc -3'
miRNA:   3'- -UCGCGCca-----UGCACCGUUgug-----AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 229631 0.67 0.972592
Target:  5'- cGCGCc--GCGUGGUAGCAUuaGAACc -3'
miRNA:   3'- uCGCGccaUGCACCGUUGUGagCUUG- -5'
16234 3' -54.1 NC_004065.1 + 200785 0.67 0.960136
Target:  5'- cGCGCGGcggugGCG-GGCGACGgcguCUCGGcGCg -3'
miRNA:   3'- uCGCGCCa----UGCaCCGUUGU----GAGCU-UG- -5'
16234 3' -54.1 NC_004065.1 + 24453 0.67 0.963561
Target:  5'- aGGCugGCGGUA-GUGGgGcaGCUCGGACa -3'
miRNA:   3'- -UCG--CGCCAUgCACCgUugUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 23619 0.67 0.969784
Target:  5'- gGGCagGCGGguggACG-GGCGGCuggcCUCGGGCc -3'
miRNA:   3'- -UCG--CGCCa---UGCaCCGUUGu---GAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 66629 0.67 0.969784
Target:  5'- gGGCuGCGGcgcUGCGUGGCGgacGCGCU--GACg -3'
miRNA:   3'- -UCG-CGCC---AUGCACCGU---UGUGAgcUUG- -5'
16234 3' -54.1 NC_004065.1 + 78280 0.67 0.960136
Target:  5'- cGUGCGGUGguCGUaGCGGCuCUCGAGg -3'
miRNA:   3'- uCGCGCCAU--GCAcCGUUGuGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 38922 0.67 0.966149
Target:  5'- uAGgGCGGUuuCGUcGGCAGgucgggugucgaGCUCGAGCg -3'
miRNA:   3'- -UCgCGCCAu-GCA-CCGUUg-----------UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 109709 0.67 0.969784
Target:  5'- cGCGCGGcgacccuCGgggGGCAACGCUUucGCc -3'
miRNA:   3'- uCGCGCCau-----GCa--CCGUUGUGAGcuUG- -5'
16234 3' -54.1 NC_004065.1 + 65437 0.67 0.966775
Target:  5'- gAGCgGCGGc-CGUGGUGGCuCUgGAGCg -3'
miRNA:   3'- -UCG-CGCCauGCACCGUUGuGAgCUUG- -5'
16234 3' -54.1 NC_004065.1 + 113926 0.68 0.934924
Target:  5'- cGCGCGuGUcgACGacGCGGCGCUCGGGg -3'
miRNA:   3'- uCGCGC-CA--UGCacCGUUGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 50435 0.68 0.93923
Target:  5'- aGGCGCGGUcgcacacGCGUGGCGcCcCUUcAGCg -3'
miRNA:   3'- -UCGCGCCA-------UGCACCGUuGuGAGcUUG- -5'
16234 3' -54.1 NC_004065.1 + 30024 0.68 0.94855
Target:  5'- -cCGCGGUGCccgucaagcugGUGGCGgaguucucgGCGCUCGAu- -3'
miRNA:   3'- ucGCGCCAUG-----------CACCGU---------UGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 179589 0.68 0.952635
Target:  5'- gGGCGCcacGCGUGuGCGACcgcgcCUCGAGCg -3'
miRNA:   3'- -UCGCGccaUGCAC-CGUUGu----GAGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.