miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 166439 0.69 0.919207
Target:  5'- uGGUGUGGUuguuACGUaGCAGCACgagcaCGGACa -3'
miRNA:   3'- -UCGCGCCA----UGCAcCGUUGUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 71136 0.69 0.913502
Target:  5'- cGGCGCGGUACuucgaacUGGCGcgcgacauccGCAgCUCGAAg -3'
miRNA:   3'- -UCGCGCCAUGc------ACCGU----------UGU-GAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 109844 0.69 0.931949
Target:  5'- gAGCGCGG--CGUcgcuccccucacccaGGUGGCACUCGGAa -3'
miRNA:   3'- -UCGCGCCauGCA---------------CCGUUGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 138506 0.69 0.929919
Target:  5'- aGGUaGCGGUaacGCGUucgacgGGCuguuGGCGCUCGAACg -3'
miRNA:   3'- -UCG-CGCCA---UGCA------CCG----UUGUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 50435 0.68 0.93923
Target:  5'- aGGCGCGGUcgcacacGCGUGGCGcCcCUUcAGCg -3'
miRNA:   3'- -UCGCGCCA-------UGCACCGUuGuGAGcUUG- -5'
16234 3' -54.1 NC_004065.1 + 113926 0.68 0.934924
Target:  5'- cGCGCGuGUcgACGacGCGGCGCUCGGGg -3'
miRNA:   3'- uCGCGC-CA--UGCacCGUUGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 127240 0.68 0.952635
Target:  5'- gGGCGCGGUgGCG-GGgAugAUgagcgCGAGCg -3'
miRNA:   3'- -UCGCGCCA-UGCaCCgUugUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 84732 0.68 0.947281
Target:  5'- --aGCGGcgACGUuaccccgucgucucGGCGAgGCUCGGACg -3'
miRNA:   3'- ucgCGCCa-UGCA--------------CCGUUgUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 69478 0.68 0.93923
Target:  5'- cGGCuGCGGUACGcGGCcAACcagaagaACUCGAcGCa -3'
miRNA:   3'- -UCG-CGCCAUGCaCCG-UUG-------UGAGCU-UG- -5'
16234 3' -54.1 NC_004065.1 + 67934 0.68 0.943795
Target:  5'- -aCGCGG-ACGUGGUAcgaGCACccguucgcuucgaUCGAGCg -3'
miRNA:   3'- ucGCGCCaUGCACCGU---UGUG-------------AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 176331 0.68 0.934924
Target:  5'- gAGgGCGGU-CGggcGGCGACACgaucaUCGGAUg -3'
miRNA:   3'- -UCgCGCCAuGCa--CCGUUGUG-----AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 22909 0.68 0.956495
Target:  5'- -aCGCGGUcaGUGGCGGCGgUCGGc- -3'
miRNA:   3'- ucGCGCCAugCACCGUUGUgAGCUug -5'
16234 3' -54.1 NC_004065.1 + 200961 0.68 0.950211
Target:  5'- gAGCGCGGcggcuccaggaucggUGCGUGGUGACgGgUCGcGACg -3'
miRNA:   3'- -UCGCGCC---------------AUGCACCGUUG-UgAGC-UUG- -5'
16234 3' -54.1 NC_004065.1 + 30024 0.68 0.94855
Target:  5'- -cCGCGGUGCccgucaagcugGUGGCGgaguucucgGCGCUCGAu- -3'
miRNA:   3'- ucGCGCCAUG-----------CACCGU---------UGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 179589 0.68 0.952635
Target:  5'- gGGCGCcacGCGUGuGCGACcgcgcCUCGAGCg -3'
miRNA:   3'- -UCGCGccaUGCAC-CGUUGu----GAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 6737 0.68 0.952635
Target:  5'- -uCGgGGUAgcCGcGGCGGCACUCGggUc -3'
miRNA:   3'- ucGCgCCAU--GCaCCGUUGUGAGCuuG- -5'
16234 3' -54.1 NC_004065.1 + 98105 0.68 0.952635
Target:  5'- aGGUGCGGgugACGaucgaaGGCA--ACUCGAACc -3'
miRNA:   3'- -UCGCGCCa--UGCa-----CCGUugUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 117421 0.68 0.94855
Target:  5'- cGGCGCGGa--GUGGCAGC-CgaucgCGAGu -3'
miRNA:   3'- -UCGCGCCaugCACCGUUGuGa----GCUUg -5'
16234 3' -54.1 NC_004065.1 + 208042 0.68 0.944238
Target:  5'- cGGCGUGGc-CGUGGCGGCcCUCa--- -3'
miRNA:   3'- -UCGCGCCauGCACCGUUGuGAGcuug -5'
16234 3' -54.1 NC_004065.1 + 48638 0.67 0.960136
Target:  5'- gGGCGCGaccagcgACGUGGCGAagaugggaUCGAGCc -3'
miRNA:   3'- -UCGCGCca-----UGCACCGUUgug-----AGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.