miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 24453 0.67 0.963561
Target:  5'- aGGCugGCGGUA-GUGGgGcaGCUCGGACa -3'
miRNA:   3'- -UCG--CGCCAUgCACCgUugUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 200785 0.67 0.960136
Target:  5'- cGCGCGGcggugGCG-GGCGACGgcguCUCGGcGCg -3'
miRNA:   3'- uCGCGCCa----UGCaCCGUUGU----GAGCU-UG- -5'
16234 3' -54.1 NC_004065.1 + 78280 0.67 0.960136
Target:  5'- cGUGCGGUGguCGUaGCGGCuCUCGAGg -3'
miRNA:   3'- uCGCGCCAU--GCAcCGUUGuGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 38922 0.67 0.966149
Target:  5'- uAGgGCGGUuuCGUcGGCAGgucgggugucgaGCUCGAGCg -3'
miRNA:   3'- -UCgCGCCAu-GCA-CCGUUg-----------UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 65437 0.67 0.966775
Target:  5'- gAGCgGCGGc-CGUGGUGGCuCUgGAGCg -3'
miRNA:   3'- -UCG-CGCCauGCACCGUUGuGAgCUUG- -5'
16234 3' -54.1 NC_004065.1 + 229631 0.67 0.972592
Target:  5'- cGCGCc--GCGUGGUAGCAUuaGAACc -3'
miRNA:   3'- uCGCGccaUGCACCGUUGUGagCUUG- -5'
16234 3' -54.1 NC_004065.1 + 168545 0.67 0.972592
Target:  5'- uAGCgGCGGUG-GUGGCAGCggcggcggcgGCgacagCGGGCg -3'
miRNA:   3'- -UCG-CGCCAUgCACCGUUG----------UGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 109709 0.67 0.969784
Target:  5'- cGCGCGGcgacccuCGgggGGCAACGCUUucGCc -3'
miRNA:   3'- uCGCGCCau-----GCa--CCGUUGUGAGcuUG- -5'
16234 3' -54.1 NC_004065.1 + 66629 0.67 0.969784
Target:  5'- gGGCuGCGGcgcUGCGUGGCGgacGCGCU--GACg -3'
miRNA:   3'- -UCG-CGCC---AUGCACCGU---UGUGAgcUUG- -5'
16234 3' -54.1 NC_004065.1 + 23619 0.67 0.969784
Target:  5'- gGGCagGCGGguggACG-GGCGGCuggcCUCGGGCc -3'
miRNA:   3'- -UCG--CGCCa---UGCaCCGUUGu---GAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 92532 0.66 0.975207
Target:  5'- cGCGCGcGUACGggcgGGCgGGCGCgCGcACg -3'
miRNA:   3'- uCGCGC-CAUGCa---CCG-UUGUGaGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 131643 0.66 0.975207
Target:  5'- uGCGCuGG-AUGUGGCGGaGCuggUCGAGCa -3'
miRNA:   3'- uCGCG-CCaUGCACCGUUgUG---AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 41495 0.66 0.977635
Target:  5'- gGGCGuCGGgACG-GGgAGCGCgCGGGCg -3'
miRNA:   3'- -UCGC-GCCaUGCaCCgUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 173440 0.66 0.975207
Target:  5'- gGGUGaCGuucgacGUACcgGUGGCGGCGCUCGAc- -3'
miRNA:   3'- -UCGC-GC------CAUG--CACCGUUGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 69292 0.66 0.98387
Target:  5'- aGGCGCGcGUACGUgcaGGCggUGa-CGGGCa -3'
miRNA:   3'- -UCGCGC-CAUGCA---CCGuuGUgaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 58426 0.66 0.98387
Target:  5'- aGGCgauGCGGuUGC-UGGCGGugaACUCGAGCu -3'
miRNA:   3'- -UCG---CGCC-AUGcACCGUUg--UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 96581 0.66 0.98387
Target:  5'- gAGcCGCGacGCGUGGCGACGCUg---- -3'
miRNA:   3'- -UC-GCGCcaUGCACCGUUGUGAgcuug -5'
16234 3' -54.1 NC_004065.1 + 24211 0.66 0.98387
Target:  5'- aAGaCGCGGUugGcgaGGUuuCGCUCGcGCc -3'
miRNA:   3'- -UC-GCGCCAugCa--CCGuuGUGAGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 106996 0.66 0.98387
Target:  5'- cGCGUGcaucccugacgaGUACGUGGCcgccAAUACcCGGACg -3'
miRNA:   3'- uCGCGC------------CAUGCACCG----UUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 213135 0.66 0.984589
Target:  5'- uGCGUGGUcaccguaGUGGCGuuggggcuggagcucAUACUCGAAg -3'
miRNA:   3'- uCGCGCCAug-----CACCGU---------------UGUGAGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.