miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 229222 1.11 0.00516
Target:  5'- gAGCGCGGUACGUGGCAACACUCGAACa -3'
miRNA:   3'- -UCGCGCCAUGCACCGUUGUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 105438 0.78 0.461489
Target:  5'- uGGUGCGGgACGUGGCGACGgaCGAGa -3'
miRNA:   3'- -UCGCGCCaUGCACCGUUGUgaGCUUg -5'
16234 3' -54.1 NC_004065.1 + 124218 0.78 0.49888
Target:  5'- cGUGCGGUGCcaGUGGUggUACUCGuGCg -3'
miRNA:   3'- uCGCGCCAUG--CACCGuuGUGAGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 141365 0.76 0.607389
Target:  5'- cGCG-GGUGC-UGGCGGCGCUCGAc- -3'
miRNA:   3'- uCGCgCCAUGcACCGUUGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 197630 0.73 0.756404
Target:  5'- cGCGaaGUACGUcGGCGGCAC-CGGGCu -3'
miRNA:   3'- uCGCgcCAUGCA-CCGUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 164764 0.73 0.756404
Target:  5'- cGUGCGGUACGUGGCGugcagggagauCAUgCGGAUg -3'
miRNA:   3'- uCGCGCCAUGCACCGUu----------GUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 155835 0.72 0.78426
Target:  5'- cGCGaCGGUGCGcuggagGGCggUcaucgGCUCGAACg -3'
miRNA:   3'- uCGC-GCCAUGCa-----CCGuuG-----UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 5697 0.72 0.78426
Target:  5'- -aCGUGGUuCGUGGCGGgACUCGGGa -3'
miRNA:   3'- ucGCGCCAuGCACCGUUgUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 112990 0.72 0.79329
Target:  5'- aGGCGCGGUgcaGCGUcucGGuCGGCACgUGAGCg -3'
miRNA:   3'- -UCGCGCCA---UGCA---CC-GUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 119526 0.72 0.819494
Target:  5'- cGGCGCGGggACGUGGUcgAGgGCcagggCGAACa -3'
miRNA:   3'- -UCGCGCCa-UGCACCG--UUgUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 79342 0.71 0.827907
Target:  5'- cGCGCGGaggACGagGGCGgcgcgGCGCUgGAACa -3'
miRNA:   3'- uCGCGCCa--UGCa-CCGU-----UGUGAgCUUG- -5'
16234 3' -54.1 NC_004065.1 + 119025 0.71 0.844204
Target:  5'- cGCGUGGUACaUGGCcgUGCUCGucAACa -3'
miRNA:   3'- uCGCGCCAUGcACCGuuGUGAGC--UUG- -5'
16234 3' -54.1 NC_004065.1 + 35749 0.71 0.852073
Target:  5'- -uCGCGGUugcaggacgGCGUGGCc-CugUCGAACg -3'
miRNA:   3'- ucGCGCCA---------UGCACCGuuGugAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 151087 0.7 0.867222
Target:  5'- uGCGCGG-GCcUGGUGGCGCcCGAGCu -3'
miRNA:   3'- uCGCGCCaUGcACCGUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 136778 0.7 0.867222
Target:  5'- gAGCGUGGgggaUGCGggggGGCca-GCUCGAGCu -3'
miRNA:   3'- -UCGCGCC----AUGCa---CCGuugUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 41392 0.7 0.87449
Target:  5'- uGGUGUGGUACGUgcucgccgccGGCGACACggUCGccguGACg -3'
miRNA:   3'- -UCGCGCCAUGCA----------CCGUUGUG--AGC----UUG- -5'
16234 3' -54.1 NC_004065.1 + 103524 0.7 0.87449
Target:  5'- cGCGCGGcGCaUGGCGACGCgggUGcAGCg -3'
miRNA:   3'- uCGCGCCaUGcACCGUUGUGa--GC-UUG- -5'
16234 3' -54.1 NC_004065.1 + 45606 0.7 0.901398
Target:  5'- gGGCGCGGgACGagGGgAACGgUCGAGa -3'
miRNA:   3'- -UCGCGCCaUGCa-CCgUUGUgAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 50754 0.7 0.901398
Target:  5'- cGUGUGGUcGCGUGGaggaGACACggCGAAUc -3'
miRNA:   3'- uCGCGCCA-UGCACCg---UUGUGa-GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 187401 0.7 0.901398
Target:  5'- cGGCGCGGU--GUGGCGuCGagggCGAGCg -3'
miRNA:   3'- -UCGCGCCAugCACCGUuGUga--GCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.