Results 61 - 75 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16234 | 3' | -54.1 | NC_004065.1 | + | 136619 | 0.66 | 0.979884 |
Target: 5'- gGGCGCuGGUcCGaGGCGGCGgUCcgGAGCg -3' miRNA: 3'- -UCGCG-CCAuGCaCCGUUGUgAG--CUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 116763 | 0.66 | 0.979884 |
Target: 5'- cGCGCGG-GCGguuucuGCAcCugUCGGACg -3' miRNA: 3'- uCGCGCCaUGCac----CGUuGugAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 68944 | 0.66 | 0.981959 |
Target: 5'- cGCGCGGagUACGagacGGCGcgcaaGCAgauCUCGGACg -3' miRNA: 3'- uCGCGCC--AUGCa---CCGU-----UGU---GAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 209947 | 0.66 | 0.981959 |
Target: 5'- cAGUuaGuGUAUGUGGCccGACgggcgGCUCGAGCg -3' miRNA: 3'- -UCGcgC-CAUGCACCG--UUG-----UGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 210597 | 0.66 | 0.981959 |
Target: 5'- cAGCGCGGUGCcuccGGCAccuccgccgACGCcggCGggUa -3' miRNA: 3'- -UCGCGCCAUGca--CCGU---------UGUGa--GCuuG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 199006 | 0.66 | 0.981959 |
Target: 5'- gGGcCGCGGc-CGagGGCAA-GCUCGAACa -3' miRNA: 3'- -UC-GCGCCauGCa-CCGUUgUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 169384 | 0.66 | 0.98387 |
Target: 5'- uGCGUGGcGCGgGGCAACACggccgUGGu- -3' miRNA: 3'- uCGCGCCaUGCaCCGUUGUGa----GCUug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 198310 | 0.66 | 0.98387 |
Target: 5'- uGUGCGGggagcucacCGUcaucGGC-ACGCUCGGGCa -3' miRNA: 3'- uCGCGCCau-------GCA----CCGuUGUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 96581 | 0.66 | 0.98387 |
Target: 5'- gAGcCGCGacGCGUGGCGACGCUg---- -3' miRNA: 3'- -UC-GCGCcaUGCACCGUUGUGAgcuug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 58426 | 0.66 | 0.98387 |
Target: 5'- aGGCgauGCGGuUGC-UGGCGGugaACUCGAGCu -3' miRNA: 3'- -UCG---CGCC-AUGcACCGUUg--UGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 24211 | 0.66 | 0.98387 |
Target: 5'- aAGaCGCGGUugGcgaGGUuuCGCUCGcGCc -3' miRNA: 3'- -UC-GCGCCAugCa--CCGuuGUGAGCuUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 106996 | 0.66 | 0.98387 |
Target: 5'- cGCGUGcaucccugacgaGUACGUGGCcgccAAUACcCGGACg -3' miRNA: 3'- uCGCGC------------CAUGCACCG----UUGUGaGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 69292 | 0.66 | 0.98387 |
Target: 5'- aGGCGCGcGUACGUgcaGGCggUGa-CGGGCa -3' miRNA: 3'- -UCGCGC-CAUGCA---CCGuuGUgaGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 213135 | 0.66 | 0.984589 |
Target: 5'- uGCGUGGUcaccguaGUGGCGuuggggcuggagcucAUACUCGAAg -3' miRNA: 3'- uCGCGCCAug-----CACCGU---------------UGUGAGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 88837 | 0.65 | 0.985113 |
Target: 5'- cGGCGCGGUcauaguugaugagcACGUucauaGGCGuCACgUCGAAg -3' miRNA: 3'- -UCGCGCCA--------------UGCA-----CCGUuGUG-AGCUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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