miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 92532 0.66 0.975207
Target:  5'- cGCGCGcGUACGggcgGGCgGGCGCgCGcACg -3'
miRNA:   3'- uCGCGC-CAUGCa---CCG-UUGUGaGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 131643 0.66 0.975207
Target:  5'- uGCGCuGG-AUGUGGCGGaGCuggUCGAGCa -3'
miRNA:   3'- uCGCG-CCaUGCACCGUUgUG---AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 173440 0.66 0.975207
Target:  5'- gGGUGaCGuucgacGUACcgGUGGCGGCGCUCGAc- -3'
miRNA:   3'- -UCGC-GC------CAUG--CACCGUUGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 68154 0.66 0.975207
Target:  5'- uGGaCGCGGUGauCGcGGCGGCGCgcgCGAc- -3'
miRNA:   3'- -UC-GCGCCAU--GCaCCGUUGUGa--GCUug -5'
16234 3' -54.1 NC_004065.1 + 220742 0.66 0.974443
Target:  5'- -uCGCGGUcgGCGUGuGCGacgucugcaucucuGCACUCGcGACg -3'
miRNA:   3'- ucGCGCCA--UGCAC-CGU--------------UGUGAGC-UUG- -5'
16234 3' -54.1 NC_004065.1 + 168545 0.67 0.972592
Target:  5'- uAGCgGCGGUG-GUGGCAGCggcggcggcgGCgacagCGGGCg -3'
miRNA:   3'- -UCG-CGCCAUgCACCGUUG----------UGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 229631 0.67 0.972592
Target:  5'- cGCGCc--GCGUGGUAGCAUuaGAACc -3'
miRNA:   3'- uCGCGccaUGCACCGUUGUGagCUUG- -5'
16234 3' -54.1 NC_004065.1 + 109709 0.67 0.969784
Target:  5'- cGCGCGGcgacccuCGgggGGCAACGCUUucGCc -3'
miRNA:   3'- uCGCGCCau-----GCa--CCGUUGUGAGcuUG- -5'
16234 3' -54.1 NC_004065.1 + 66629 0.67 0.969784
Target:  5'- gGGCuGCGGcgcUGCGUGGCGgacGCGCU--GACg -3'
miRNA:   3'- -UCG-CGCC---AUGCACCGU---UGUGAgcUUG- -5'
16234 3' -54.1 NC_004065.1 + 23619 0.67 0.969784
Target:  5'- gGGCagGCGGguggACG-GGCGGCuggcCUCGGGCc -3'
miRNA:   3'- -UCG--CGCCa---UGCaCCGUUGu---GAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 65437 0.67 0.966775
Target:  5'- gAGCgGCGGc-CGUGGUGGCuCUgGAGCg -3'
miRNA:   3'- -UCG-CGCCauGCACCGUUGuGAgCUUG- -5'
16234 3' -54.1 NC_004065.1 + 38922 0.67 0.966149
Target:  5'- uAGgGCGGUuuCGUcGGCAGgucgggugucgaGCUCGAGCg -3'
miRNA:   3'- -UCgCGCCAu-GCA-CCGUUg-----------UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 24453 0.67 0.963561
Target:  5'- aGGCugGCGGUA-GUGGgGcaGCUCGGACa -3'
miRNA:   3'- -UCG--CGCCAUgCACCgUugUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 78280 0.67 0.960136
Target:  5'- cGUGCGGUGguCGUaGCGGCuCUCGAGg -3'
miRNA:   3'- uCGCGCCAU--GCAcCGUUGuGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 200785 0.67 0.960136
Target:  5'- cGCGCGGcggugGCG-GGCGACGgcguCUCGGcGCg -3'
miRNA:   3'- uCGCGCCa----UGCaCCGUUGU----GAGCU-UG- -5'
16234 3' -54.1 NC_004065.1 + 48638 0.67 0.960136
Target:  5'- gGGCGCGaccagcgACGUGGCGAagaugggaUCGAGCc -3'
miRNA:   3'- -UCGCGCca-----UGCACCGUUgug-----AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 22909 0.68 0.956495
Target:  5'- -aCGCGGUcaGUGGCGGCGgUCGGc- -3'
miRNA:   3'- ucGCGCCAugCACCGUUGUgAGCUug -5'
16234 3' -54.1 NC_004065.1 + 6737 0.68 0.952635
Target:  5'- -uCGgGGUAgcCGcGGCGGCACUCGggUc -3'
miRNA:   3'- ucGCgCCAU--GCaCCGUUGUGAGCuuG- -5'
16234 3' -54.1 NC_004065.1 + 98105 0.68 0.952635
Target:  5'- aGGUGCGGgugACGaucgaaGGCA--ACUCGAACc -3'
miRNA:   3'- -UCGCGCCa--UGCa-----CCGUugUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 179589 0.68 0.952635
Target:  5'- gGGCGCcacGCGUGuGCGACcgcgcCUCGAGCg -3'
miRNA:   3'- -UCGCGccaUGCAC-CGUUGu----GAGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.